项目编号

PRJCA015823

项目标题

whole genome resequencing of E. coli

涉及领域

Evolution

数据类型

Raw sequence reads

物种名称

Escherichia coli

描述信息

whole genome resequencing of E. coli (100 strains). (1) 1-45 strains: Genomes were paired-end re-sequenced using the Illumina HiSeq 2000/2500 instrument (Illumina inc., San Diego, CA, USA) with around 20 coverage for each genome. The initial strains in this experiment were genomes sequenced. Genomic DNA from different isolates was all genomes sequenced independently. Reads were 100/125 bp long, sequenced in pairs with a mean insert size of 500 bp. For E. coli between 405 and 1,260 Mb clean data (793 Mb on average) were obtained for each individual. (2) 46-100 strains: Genomes were paired-end re-sequenced using the Illumina HiSeq 4000 instrument (Illumina inc., San Diego, CA, USA) with around 20 coverage for each genome. The initial strains in this experiment were genomes sequenced. Genomic DNA from different isolates was all genomes sequenced independently. Reads were 150 bp long, sequenced in pairs with a mean insert size of 300 bp. For E. coli between 727 and 1,268 Mb clean data (921 Mb on average) were obtained for each individual.

样品范围

Multiisolate

发布日期

2023-03-31

出版信息

PubMed ID	文章标题	杂志名称	Doi	发表年份
38029174	Competition-cooperation mechanism between Escherichia coli and Staphylococcus aureus based on systems mapping	Frontiers in Microbiology	10.3389/fmicb.2023.1192574	2023

项目资金来源

机构	项目类型	授权项目ID	授权项目名称
National Natural Science Foundation of China (NSFC)		31971398

项目相关网站链接

项目相关网站链接	网站信息描述
https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA319751	NCBI: 45 strains E. coli (PRJNA319751)
https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA550335	NCBI: 55 strains E. coli (PRJNA550335)

提交者

Caifeng Li (cfli2020@bjfu.edu.cn)

提交单位

Beijing Forestry University

提交日期

2023-03-25

项目包含数据信息

资源名称	描述
BioSample (100) show	-
SAMC1176421	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176420	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176419	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176418	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176417	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176416	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176415	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176414	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176413	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176412	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176411	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176410	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176409	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176408	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176407	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176406	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176405	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176404	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176403	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176402	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176401	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176400	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176399	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176398	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176397	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176396	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176395	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176394	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176393	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176392	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176391	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176390	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176389	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176388	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176387	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176386	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176385	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176384	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176383	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176382	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176381	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176380	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176379	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176378	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176377	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176376	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176375	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176374	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176373	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176372	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176371	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176370	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176369	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176368	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176367	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176366	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176365	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176364	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176363	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176362	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176361	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176360	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176359	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176358	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176357	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176356	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176355	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176354	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176353	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176352	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176351	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176350	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176349	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176348	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176347	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176346	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176345	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176344	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176343	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176342	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176341	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176340	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176339	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176338	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176337	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176336	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176335	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176334	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176333	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176332	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176331	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176330	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176329	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176328	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176327	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176326	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176325	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176324	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176323	whole genome resequencing of E. coli: Sample Escherichia coli
SAMC1176322	whole genome resequencing of E. coli: Sample Escherichia coli
GSA (1)	-
CRA010512	whole genome resequencing of E. coli