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项目编号 PRJCA015825
项目标题 whole genome resequencing of S. aureus
涉及领域 Evolution
数据类型 Raw sequence reads
物种名称 Staphylococcus aureus
描述信息 Whole genome resequencing of S. aureus (100 strains). (1) 1-45 strains: Genomes were paired-end re-sequenced using the Illumina HiSeq 2000/2500 instrument (Illumina inc., San Diego, CA, USA) with around 20 coverage for each genome. The initial strains in this experiment were genomes sequenced. Genomic DNA from different isolates was all genomes sequenced independently. Reads were 100/125 bp long, sequenced in pairs with a mean insert size of 500 bp. For S. aureus between 800 and 1,556 Mb clean data (1,098 Mb on average) were obtained for each individual. (2) 46-100 strains: Genomes were paired-end re-sequenced using the Illumina HiSeq 4000 instrument (Illumina inc., San Diego, CA, USA) with around 20 coverage for each genome. The initial strains in this experiment were genomes sequenced. Genomic DNA from different isolates was all genomes sequenced independently. Reads were 150 bp long, sequenced in pairs with a mean insert size of 300 bp. For S. aureus between 686 and 1298 Mb clean data (937 Mb on average) were obtained for each individual.
样品范围 Multiisolate
发布日期 2023-03-31
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
38029174 Competition-cooperation mechanism between Escherichia coli and Staphylococcus aureus based on systems mapping Frontiers in Microbiology 10.3389/fmicb.2023.1192574 2023
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) 31971398
项目相关网站链接
项目相关网站链接 网站信息描述
https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA320004 NCBI: 45 strains S. aureus (PRJNA320004)
https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA550358 NCBI: 55 strains S. aureus (PRJNA550358)
提交者 Caifeng Li (cfli2020@bjfu.edu.cn)
提交单位 Beijing Forestry University
提交日期 2023-03-25

项目包含数据信息

资源名称 描述
BioSample (100)  show -
GSA (1) -
CRA010516 whole genome resequencing of S. aureus