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Accession PRJCA015825
Title whole genome resequencing of S. aureus
Relevance Evolution
Data types Raw sequence reads
Organisms Staphylococcus aureus
Description Whole genome resequencing of S. aureus (100 strains). (1) 1-45 strains: Genomes were paired-end re-sequenced using the Illumina HiSeq 2000/2500 instrument (Illumina inc., San Diego, CA, USA) with around 20 coverage for each genome. The initial strains in this experiment were genomes sequenced. Genomic DNA from different isolates was all genomes sequenced independently. Reads were 100/125 bp long, sequenced in pairs with a mean insert size of 500 bp. For S. aureus between 800 and 1,556 Mb clean data (1,098 Mb on average) were obtained for each individual. (2) 46-100 strains: Genomes were paired-end re-sequenced using the Illumina HiSeq 4000 instrument (Illumina inc., San Diego, CA, USA) with around 20 coverage for each genome. The initial strains in this experiment were genomes sequenced. Genomic DNA from different isolates was all genomes sequenced independently. Reads were 150 bp long, sequenced in pairs with a mean insert size of 300 bp. For S. aureus between 686 and 1298 Mb clean data (937 Mb on average) were obtained for each individual.
Sample scope Multiisolate
Release date 2023-03-31
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) 31971398
External link
External link Link description
https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA320004 NCBI: 45 strains S. aureus (PRJNA320004)
https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA550358 NCBI: 55 strains S. aureus (PRJNA550358)
Submitter Caifeng Li (cfli2020@bjfu.edu.cn)
Organization Beijing Forestry University
Submission date 2023-03-25

Project Data

Resource name Description
BioSample (100)  show -
GSA (1) -
CRA010516 whole genome resequencing of S. aureus