| 项目编号 |
PRJCA017278 |
| 项目标题 |
Sea-ATI Unravels Novel Vocabularies of Plant Active Cistrome |
| 涉及领域 |
Agricultural |
| 数据类型 |
Epigenomics
Raw sequence reads
|
| 物种名称 |
Arabidopsis thaliana
Cenchrus americanus
|
| 描述信息 |
The cistrome consists of all cis-acting regulatory elements recognized by transcription factors (TFs). However, only a portion of the cistrome is active for TF binding in a specific tissue. Resolving the active cistrome in plants remains challenging. In this study, we report the assay sequential extraction assisted-active TF identification (sea-ATI), a low-input method that comprehensively profiles the DNA sequences recognized by TFs in a target tissue. We applied sea-ATI to seven plant tissues to survey their active cistrome. The generated sea-ATI libraries together with the ATAC-seq and RNA-seq data of the corresponding tissues are collected and uploaded. |
| 样品范围 |
Multispecies |
| 发布日期 |
2023-09-22 |
| 出版信息 |
| PubMed ID |
文章标题 |
杂志名称 |
Doi |
发表年份 |
| 37850650
|
Sea-ATI unravels novel vocabularies of plant active cistrome
|
Nucleic Acids Research
|
10.1093/nar/gkad853
|
2023
|
|
|
| 项目资金来源 |
| 机构 |
项目类型 |
授权项目ID |
授权项目名称 |
| National Natural Science Foundation of China (NSFC)
|
|
32170554
|
|
| Natural Science Foundation of Fujian
|
|
2022J06017
|
|
| Major Special Project of Fujian
|
|
2021NZ029009
|
|
| Fujian Agriculture and Forestry University
|
|
XKJC-712021030
|
|
| Fujian Agriculture and Forestry University
|
|
102-118990010
|
|
| National Natural Science Foundation of China (NSFC)
|
|
32000448
|
|
| Fujian Agriculture and Forestry University
|
|
xjq20201
|
|
| Construction of Plateau Discipline of Fujian Province
|
|
102/71201801101
|
|
|
|
| 提交者 |
Fangjie
Zhu (fjzhu@fafu.edu.cn)
|
| 提交单位 |
Room 604-3, Xiaan #1 Bldg, No.15 Shangxiadian Road, Fuzhou 350028, China |
| 提交日期 |
2023-02-06 |
