| 项目编号 | PRJCA017278 | ||||||||||||||||||||||||||||||||||||
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| 项目标题 | Sea-ATI Unravels Novel Vocabularies of Plant Active Cistrome | ||||||||||||||||||||||||||||||||||||
| 涉及领域 | Agricultural | ||||||||||||||||||||||||||||||||||||
| 数据类型 |
Epigenomics
Raw sequence reads |
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| 物种名称 |
Arabidopsis thaliana
Cenchrus americanus |
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| 描述信息 | The cistrome consists of all cis-acting regulatory elements recognized by transcription factors (TFs). However, only a portion of the cistrome is active for TF binding in a specific tissue. Resolving the active cistrome in plants remains challenging. In this study, we report the assay sequential extraction assisted-active TF identification (sea-ATI), a low-input method that comprehensively profiles the DNA sequences recognized by TFs in a target tissue. We applied sea-ATI to seven plant tissues to survey their active cistrome. The generated sea-ATI libraries together with the ATAC-seq and RNA-seq data of the corresponding tissues are collected and uploaded. | ||||||||||||||||||||||||||||||||||||
| 样品范围 | Multispecies | ||||||||||||||||||||||||||||||||||||
| 发布日期 | 2023-09-22 | ||||||||||||||||||||||||||||||||||||
| 项目资金来源 |
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| 提交者 | Fangjie Zhu (fjzhu@fafu.edu.cn) | ||||||||||||||||||||||||||||||||||||
| 提交单位 | Room 604-3, Xiaan #1 Bldg, No.15 Shangxiadian Road, Fuzhou 350028, China | ||||||||||||||||||||||||||||||||||||
| 提交日期 | 2023-02-06 |