项目编号

PRJCA018867

项目标题

genome sequence of Oncidium hybridum

涉及领域

Agricultural

数据类型

Assembly

物种名称

Oncidium

描述信息

This project used HifI reads, HIC reads and RNA-seq data to complete the assembly and annotation of Oncidium hybridum

样品范围

Plant

发布日期

2023-08-10

出版信息

PubMed ID	文章标题	杂志名称	Doi	发表年份
39408686	Integrative Analysis of Transcriptome and Metabolome Reveals the Pivotal Role of the NAM Family Genes in Oncidium hybridum Lodd. Pseudobulb Growth	International Journal of Molecular Sciences	10.3390/ijms251910355	2024

实验材料提供者

Professor Peng Ling

项目资金来源

机构	项目类型	授权项目ID	授权项目名称
National Natural Science Foundation of China (NSFC)	Young Scientists Fund	32201624	Dissecting the genetic variation of flower color in oncidium hybridum based on genome assembly and genome-wide association study

提交者

Minqiang Tang (tangminqiang@hainanu.edu.cn)

提交单位

Hainan University

提交日期

2023-08-06

项目包含数据信息

资源名称	描述
BioSample (83) show	-
SAMC4296169	RNA-seq data of flower bud_3 in O. 'Honey Angle' variety
SAMC4296168	RNA-seq data of flower bud_2 in O. 'Honey Angle' variety
SAMC4296167	RNA-seq data of flower bud_1 in O. 'Honey Angle' variety
SAMC4296166	RNA-seq data of vegetative bud_3 in O. 'Honey Angle' variety
SAMC4296165	RNA-seq data of vegetative bud_2 in O. 'Honey Angle' variety
SAMC4296164	RNA-seq data of vegetative bud_1 in O. 'Honey Angle' variety
SAMC4076097	RNA-seq data of stem in Oncidium hybridum
SAMC4076096	RNA-seq data of root in Oncidium hybridum
SAMC4076095	RNA-seq data of pseudobulb in Oncidium hybridum
SAMC4076094	RNA-seq data of flower in Oncidium hybridum
SAMC4076093	RNA-seq data of leaf in Oncidium hybridum
SAMC4076092	Isoseq CCS data of mixed different tissues (roots, stems, leaves, flowers, and pseudobulbs) of Oncidium hybridum 'honeybee'.
SAMC4076091	HiC sequencing data of Oncidium hybridum 'Honeybee'
SAMC4076090	Whole genome HiFi sequencing data of Oncidium hybridum 'Honeybee',Cell 3
SAMC4076089	Whole genome HiFi sequencing data of Oncidium hybridum 'Honeybee',Cell 2
SAMC4076088	Whole genome HiFi sequencing data of Oncidium hybridum 'Honeybee',Cell 1
SAMC3818328	RNA-seq data of Senescence_3
SAMC3818327	RNA-seq data of Senescence_2
SAMC3818326	RNA-seq data of Senescence_1
SAMC3818325	RNA-seq data of Later_3
SAMC3818324	RNA-seq data of Later_2
SAMC3818323	RNA-seq data of Later_1
SAMC3818322	RNA-seq data of Middle_3
SAMC3818321	RNA-seq data of Middle_2
SAMC3818320	RNA-seq data of Middle_1
SAMC3818319	RNA-seq data of Early_3
SAMC3818318	RNA-seq data of Early_2
SAMC3818317	RNA-seq data of Early_1
SAMC3464254	RNA-seq of S3_3
SAMC3464253	RNA-seq of S3_2
SAMC3464252	RNA-seq of S3_1
SAMC3464251	RNA-seq of S2_3
SAMC3464250	RNA-seq of S2_2
SAMC3464249	RNA-seq of S2_1
SAMC3464248	RNA-seq of S1_3
SAMC3464247	RNA-seq of S1_2
SAMC3464246	RNA-seq of S1_1
SAMC3464245	RNA-seq of P3_3
SAMC3464244	RNA-seq of P3_2
SAMC3464243	RNA-seq of P3_1
SAMC3464242	RNA-seq of P2_3
SAMC3464241	RNA-seq of P2_2
SAMC3464240	RNA-seq of P2_1
SAMC3464239	RNA-seq of P1_3
SAMC3464238	RNA-seq of P1_2
SAMC3464237	RNA-seq of P1_1
SAMC3464236	RNA-seq of L3_3
SAMC3464235	RNA-seq of L3_2
SAMC3464234	RNA-seq of L3_1
SAMC3464233	RNA-seq of L2_3
SAMC3464232	RNA-seq of L2_2
SAMC3464231	RNA-seq of L2_1
SAMC3464230	RNA-seq of L1_3
SAMC3464229	RNA-seq of L1_2
SAMC3464228	RNA-seq of L1_1
SAMC3464227	RNA-seq of A_S3_3
SAMC3464226	RNA-seq of A_S3_2
SAMC3464225	RNA-seq of A_S3_1
SAMC3464224	RNA-seq of A_S2_3
SAMC3464223	RNA-seq of A_S2_2
SAMC3464222	RNA-seq of A_S2_1
SAMC3464221	RNA-seq of A_S1_3
SAMC3464220	RNA-seq of A_S1_2
SAMC3464219	RNA-seq of A_S1_1
SAMC3464218	RNA-seq of A_P3_3
SAMC3464217	RNA-seq of A_P3_2
SAMC3464216	RNA-seq of A_P3_1
SAMC3464215	RNA-seq of A_P2_3
SAMC3464214	RNA-seq of A_P2_2
SAMC3464213	RNA-seq of A_P2_1
SAMC3464212	RNA-seq of A_P1_3
SAMC3464211	RNA-seq of A_P1_2
SAMC3464210	RNA-seq of A_P1_1
SAMC3464209	RNA-seq of A_L3_3
SAMC3464208	RNA-seq of A_L3_2
SAMC3464207	RNA-seq of A_L3_1
SAMC3464206	RNA-seq of A_L2_3
SAMC3464205	RNA-seq of A_L2_2
SAMC3464204	RNA-seq of A_L2_1
SAMC3464203	RNA-seq of A_L1_3
SAMC3464202	RNA-seq of A_L1_2
SAMC3464201	RNA-seq of A_L1_1
SAMC2979153	Genome sequence of Oncidium hybridum
GSA (4)	-
CRA020078	RNA-seq data of flower buds and vegetative buds in Oncidium hybridum
CRA018410	Genome sequencing and RNA-seq data of Oncidium hybridum
CRA017038	RNA-seq data of pseudobulb in Oncidium hybridum
CRA015483	RNA-seq data of Oncidium hybridum