| 项目编号 |
PRJCA019407 |
| 项目标题 |
RNA-seq and CUT&Tag-seq for BBX29 study |
| 涉及领域 |
plant science |
| 数据类型 |
Transcriptome or Gene expression
Raw sequence reads
CUT&Tag-seq
|
| 物种名称 |
Arabidopsis thaliana
|
| 描述信息 |
To determine the molecular role of BBX29 under cold stress, we performed RNA-seq experiments of Arabidopsis Col-0, 35S::BBX29-Myc (OE5), and bbx29-2 under different time points (0, 2, and 24 h) of cold (4°C) stress treatments. To further identify BBX29 directly targeted genes, we perfomed cleavage under targets and tagmentation (CUT&Tag) experiments of 35S::BBX29-Myc (OE5) and the wild type Col-0. Based on RNA-seq and CUT&Tag-seq analysis, we predicted the direct target genes of BBX29 in the Arabidopsis thaliana genome. |
| 样品范围 |
Multiisolate |
| 发布日期 |
2023-09-01 |
| 出版信息 |
| PubMed ID |
文章标题 |
杂志名称 |
Doi |
发表年份 |
| 37674317
|
Orthogroup and phylotranscriptomic analyses identify transcription factors involved in the plant cold response: A case study of Arabidopsis BBX29
|
Plant Communications
|
10.1016/j.xplc.2023.100684
|
2023
|
|
|
| 项目资金来源 |
| 机构 |
项目类型 |
授权项目ID |
授权项目名称 |
| National Natural Science Foundation of China (NSFC)
|
|
31871233
|
|
|
|
| 本项目在其他数据库系统中的项目序列号 |
| 项目序列号 |
数据库名称 |
| PRJNA881642
|
NCBI
|
|
|
| 提交者 |
Wenwu
Wu (wwwu@zafu.edu.cn)
|
| 提交单位 |
Zhejiang A&F University |
| 提交日期 |
2023-08-30 |
