| 项目编号 | PRJCA019609 | ||||||||||||||||||||||||
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| 项目标题 | Three chromosomal-level genome assemblies of Chinese native pigs | ||||||||||||||||||||||||
| 涉及领域 | Agricultural | ||||||||||||||||||||||||
| 数据类型 |
Whole genome sequencing
Genome sequencing and assembly Raw sequence reads Assembly |
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| 物种名称 | Sus scrofa | ||||||||||||||||||||||||
| 描述信息 | In this study, we performed three chromosomal-level genomes assemblies of Chinese native pigs and detected the structural variations in these assemblies. We found that the SVs in these Chinese domestic pigs exhibited enrichment in promoters. Moreover, we found four important genes under selection based on SVs and could be the candidate maker in the pig breeding. To assemble the three genomes, we achieved the PacBio reads for each breed. The assembled genomes were corrected using the high throughput sequencing reads. The scaffolds in the assembled genome were anchored to chromosome using the Hi-C data. To annotate the genes in each genome, 10~16 tissues for each breed were used for transcriptome sequnecing. | ||||||||||||||||||||||||
| 样品范围 | Multispecies | ||||||||||||||||||||||||
| 发布日期 | 2024-10-15 | ||||||||||||||||||||||||
| 项目资金来源 |
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| 提交者 | Jian-Feng Liu (liujf@cau.edu.cn) | ||||||||||||||||||||||||
| 提交单位 | China Agricultural University | ||||||||||||||||||||||||
| 提交日期 | 2023-09-08 |