项目编号 PRJCA019863
项目标题 3D Reconstruction of a Gastrulating Human Embryo through Spatial Transcriptomics Profiling
涉及领域 Medical
数据类型 Raw sequence reads
物种名称 Homo sapiens
描述信息 Human gastrulation establishes the blueprint for three germ layers and the body axis in the early embryo. Concurrently, diverse extraembryonic cellular lineages are segregated to support proper gastrula development and pattern formation. The coordination of cellular patterning during this stage, along the anterior-posterior, left-right, and dorsal-ventral body axes, is regulated by dynamic signaling centers within the embryonic region and at the embryonic and extraembryonic interface. Comprehensive knowledge on the molecular code as well as the key events of embryonic and extraembryonic development in vivo, is crucial for comprehending human development and advancing stem-cell-based technologies. However, research on this stage is extremely challenging, particularly in humans, due to the inaccessibility and infrequent availability of in vivo embryos, as well as ethical concerns regarding in vitro cultured embryos. Here, we obtained a first in vivo intact gastrulating human embryo embryos corresponding to Carnegie stage eight (CS8), and performed serial transverse sectioning for single-cell stereo-seq, resulting in a comprehensive spatial transcriptomic dataset (totally 247,300 spots). Through virtual reconstruction of CS8 human embryo at single-cell resolution, we provide the first in vivo insights into the dynamic heterogeneity and developmental trajectories of the three germ layers with spatial diversity. Additionally, we systematically construct an atlas of the extraembryonic mesoderm and endoderm development. We traced the origin and maturation of hemogenic progenitors in the yolk sac and spatial pattern formation during morphogenesis. Finally, we perform cross-species comparisons of gastrulation among mice, monkeys, and humans. In summary, our data offers valuable insights into human gastrulation and its associated disorders.
样品范围 human CS8 stereo-seq
发布日期 2024-03-22
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) E3118411
提交者 Jingtao Guo (jingtao.guo@ioz.ac.cn)
提交单位 Institute of Zoology, Chinese Academy of Sciences
提交日期 2023-09-17

项目包含数据信息

资源名称 描述
BioSample (1) -
SAMC3084700 CS8 embryo