Accession

PRJCA022025

Title

Haplotype-resolved chromosome-level genome assembly of Huyou (Citrus changshanensis)

Relevance

Agricultural

Data types

Whole genome sequencing
Transcriptome or Gene expression
Genome sequencing and assembly
Raw sequence reads

Organisms

Citrus x changshan-huyou

Description

In this study, we report a phased chromosome-level genome assembly of Huyou. Hifiasm combined Pacbio and Hi-C sequencing reads, resulted in one primary genome assembly and two haplotypes, which contain nine pseudochromosomes with sizes of 338.11Mb, 325.16Mb, and 313.78 Mb, respectively. Using the transcriptome data and annotations of homologous species, we identified a total of 30,390 protein-coding genes and 177.55 Mb repetitive sequences in the genome of Huyou.

Sample scope

Multiisolate

Release date

2023-12-13

Grants

Agency	program	Grant ID	Grant title
Ministry of Science and Technology of the People's Republic of China (MOST)		2022SNJF083	SanNongJiuFang Project of Zhejiang Province
Ministry of Science and Technology of the People's Republic of China (MOST)		588970-Y12202	National Agricultural Science and Technology Modernization Project between Zhejiang University and Changshan County

Submitter

Changjiu Miao (1539637481@qq.com)

Organization

Zhejiang University

Submission date

2023-12-13

Project Data

Resource name	Description
BioSample (9) show	-
SAMC3265758	RNA-seq data for unripe fruit of Huyou
SAMC3265757	RNA-seq data for ripe fruit of Huyou
SAMC3265756	RNA-seq data for flower of Huyou
SAMC3265755	RNA-seq data for stem of Huyou
SAMC3265754	RNA-seq data for root of Huyou
SAMC3265753	RNA-seq data for leaf of Huyou
SAMC3265752	Hi-C reads of Huyou
SAMC3265751	Pacbio HiFi reads of Huyou
SAMC3265750	illumina short reads of Huyou
GSA (1)	-
CRA013954	Haplotype-resolved chromosome-level genome assembly of Huyou (Citrus changshanensis)