Accession

PRJCA022610

Title

Haplotype-based pangenomes reveal genetic variations and climate adaptations in moso bamboo populations

Relevance

Agricultural

Data types

Whole genome sequencing
Raw sequence reads

Organisms

Phyllostachys edulis

Description

Data used to construct and analyse the moso bamboo pangenome

Sample scope

Multiisolate

Release date

2024-07-30

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China (NSFC)	General Program	31971733

Submitter

Hansheng Zhao (zhao.hs@139.com)

Organization

International Centre for Bamboo and Rattan

Submission date

2024-01-04

Project Data

Resource name	Description
BioSample (245) show	-
SAMC3307496	RNA-Seq for root of moso bamboo YA
SAMC3306920	RNA-Seq for root of moso bamboo YX
SAMC3306919	RNA-Seq for leaf of moso bamboo YF
SAMC3306918	RNA-Seq for root of moso bamboo XA
SAMC3306917	RNA-Seq for leaf of moso bamboo XA
SAMC3306916	RNA-Seq for root of moso bamboo WYS
SAMC3306915	RNA-Seq for stem of moso bamboo HZP
SAMC3306914	RNA-Seq for stem of moso bamboo HZP
SAMC3306913	RNA-Seq for stem of moso bamboo HZP
SAMC3306912	RNA-Seq for leaf of moso bamboo HZP
SAMC3306911	RNA-Seq for leaf of moso bamboo HZP
SAMC3306910	RNA-Seq for leaf of moso bamboo HZP
SAMC3306909	RNA-Seq for root of moso bamboo HS
SAMC3306908	RNA-Seq for root of moso bamboo HS
SAMC3306907	RNA-Seq for stem of moso bamboo HS
SAMC3306906	RNA-Seq for root of moso bamboo DA
SAMC3306905	RNA-Seq for root of moso bamboo CS
SAMC3306904	RNA-Seq for root of moso bamboo CS
SAMC3306903	RNA-Seq for stem of moso bamboo CS
SAMC3304608	Hi-C of moso bamboo HB
SAMC3304607	Hi-C of moso bamboo HZP
SAMC3304606	Hi-C of moso bamboo CY
SAMC3304605	RNA-Seq for root of moso bamboo YX
SAMC3304604	RNA-Seq for root of moso bamboo YX
SAMC3304603	RNA-Seq for root of moso bamboo YX
SAMC3304602	RNA-Seq for rhizome of moso bamboo YX
SAMC3304601	RNA-Seq for rhizome of moso bamboo YX
SAMC3304600	RNA-Seq for rhizome of moso bamboo YX
SAMC3304599	RNA-Seq for stem of moso bamboo YX
SAMC3304598	RNA-Seq for stem of moso bamboo YX
SAMC3304597	RNA-Seq for stem of moso bamboo YX
SAMC3304596	RNA-Seq for leaf of moso bamboo YX
SAMC3304595	RNA-Seq for leaf of moso bamboo YX
SAMC3304594	RNA-Seq for leaf of moso bamboo YX
SAMC3304593	RNA-Seq for root of moso bamboo YF
SAMC3304592	RNA-Seq for root of moso bamboo YF
SAMC3304591	RNA-Seq for root of moso bamboo YF
SAMC3304590	RNA-Seq for rhizome of moso bamboo YF
SAMC3304589	RNA-Seq for rhizome of moso bamboo YF
SAMC3304588	RNA-Seq for rhizome of moso bamboo YF
SAMC3304587	RNA-Seq for stem of moso bamboo YF
SAMC3304586	RNA-Seq for stem of moso bamboo YF
SAMC3304585	RNA-Seq for stem of moso bamboo YF
SAMC3304584	RNA-Seq for leaf of moso bamboo YF
SAMC3304583	RNA-Seq for leaf of moso bamboo YF
SAMC3304582	RNA-Seq for leaf of moso bamboo YF
SAMC3304581	RNA-Seq for root of moso bamboo YA
SAMC3304580	RNA-Seq for root of moso bamboo YA
SAMC3304579	RNA-Seq for root of moso bamboo YA
SAMC3304578	RNA-Seq for rhizome of moso bamboo YA
SAMC3304577	RNA-Seq for rhizome of moso bamboo YA
SAMC3304576	RNA-Seq for rhizome of moso bamboo YA
SAMC3304575	RNA-Seq for stem of moso bamboo YA
SAMC3304574	RNA-Seq for stem of moso bamboo YA
SAMC3304573	RNA-Seq for stem of moso bamboo YA
SAMC3304572	RNA-Seq for leaf of moso bamboo YA
SAMC3304571	RNA-Seq for leaf of moso bamboo YA
SAMC3304570	RNA-Seq for leaf of moso bamboo YA
SAMC3304569	RNA-Seq for root of moso bamboo XN
SAMC3304568	RNA-Seq for root of moso bamboo XN
SAMC3304567	RNA-Seq for root of moso bamboo XN
SAMC3304566	RNA-Seq for rhizome of moso bamboo XN
SAMC3304565	RNA-Seq for rhizome of moso bamboo XN
SAMC3304564	RNA-Seq for rhizome of moso bamboo XN
SAMC3304563	RNA-Seq for stem of moso bamboo XN
SAMC3304562	RNA-Seq for stem of moso bamboo XN
SAMC3304561	RNA-Seq for stem of moso bamboo XN
SAMC3304560	RNA-Seq for leaf of moso bamboo XN
SAMC3304559	RNA-Seq for leaf of moso bamboo XN
SAMC3304558	RNA-Seq for leaf of moso bamboo XN
SAMC3304557	RNA-Seq for root of moso bamboo XA
SAMC3304556	RNA-Seq for root of moso bamboo XA
SAMC3304555	RNA-Seq for root of moso bamboo XA
SAMC3304554	RNA-Seq for rhizome of moso bamboo XA
SAMC3304553	RNA-Seq for rhizome of moso bamboo XA
SAMC3304552	RNA-Seq for rhizome of moso bamboo XA
SAMC3304551	RNA-Seq for stem of moso bamboo XA
SAMC3304550	RNA-Seq for stem of moso bamboo XA
SAMC3304549	RNA-Seq for stem of moso bamboo XA
SAMC3304548	RNA-Seq for leaf of moso bamboo XA
SAMC3304547	RNA-Seq for leaf of moso bamboo XA
SAMC3304546	RNA-Seq for leaf of moso bamboo XA
SAMC3304545	RNA-Seq for root of moso bamboo WYS
SAMC3304544	RNA-Seq for root of moso bamboo WYS
SAMC3304543	RNA-Seq for root of moso bamboo WYS
SAMC3304542	RNA-Seq for rhizome of moso bamboo WYS
SAMC3304541	RNA-Seq for rhizome of moso bamboo WYS
SAMC3304540	RNA-Seq for rhizome of moso bamboo WYS
SAMC3304539	RNA-Seq for stem of moso bamboo WYS
SAMC3304538	RNA-Seq for stem of moso bamboo WYS
SAMC3304537	RNA-Seq for stem of moso bamboo WYS
SAMC3304536	RNA-Seq for leaf of moso bamboo WYS
SAMC3304535	RNA-Seq for leaf of moso bamboo WYS
SAMC3304534	RNA-Seq for leaf of moso bamboo WYS
SAMC3304533	RNA-Seq for root of moso bamboo RH
SAMC3304532	RNA-Seq for root of moso bamboo RH
SAMC3304531	RNA-Seq for root of moso bamboo RH
SAMC3304530	RNA-Seq for rhizome of moso bamboo RH
SAMC3304529	RNA-Seq for rhizome of moso bamboo RH
SAMC3304528	RNA-Seq for rhizome of moso bamboo RH
SAMC3304527	RNA-Seq for stem of moso bamboo RH
SAMC3304526	RNA-Seq for stem of moso bamboo RH
SAMC3304525	RNA-Seq for stem of moso bamboo RH
SAMC3304524	RNA-Seq for leaf of moso bamboo RH
SAMC3304523	RNA-Seq for leaf of moso bamboo RH
SAMC3304522	RNA-Seq for leaf of moso bamboo RH
SAMC3304521	RNA-Seq for root of moso bamboo LY
SAMC3304520	RNA-Seq for root of moso bamboo LY
SAMC3304519	RNA-Seq for root of moso bamboo LY
SAMC3304518	RNA-Seq for rhizome of moso bamboo LY
SAMC3304517	RNA-Seq for rhizome of moso bamboo LY
SAMC3304516	RNA-Seq for rhizome of moso bamboo LY
SAMC3304515	RNA-Seq for stem of moso bamboo LY
SAMC3304514	RNA-Seq for stem of moso bamboo LY
SAMC3304513	RNA-Seq for stem of moso bamboo LY
SAMC3304512	RNA-Seq for leaf of moso bamboo LY
SAMC3304511	RNA-Seq for leaf of moso bamboo LY
SAMC3304510	RNA-Seq for leaf of moso bamboo LY
SAMC3304509	RNA-Seq for rhizome of moso bamboo JZ
SAMC3304508	RNA-Seq for rhizome of moso bamboo JZ
SAMC3304507	RNA-Seq for rhizome of moso bamboo JZ
SAMC3304506	RNA-Seq for stem of moso bamboo JZ
SAMC3304505	RNA-Seq for stem of moso bamboo JZ
SAMC3304504	RNA-Seq for stem of moso bamboo JZ
SAMC3304503	RNA-Seq for leaf of moso bamboo JZ
SAMC3304502	RNA-Seq for leaf of moso bamboo JZ
SAMC3304501	RNA-Seq for leaf of moso bamboo JZ
SAMC3304500	RNA-Seq for rhizome of moso bamboo HZP
SAMC3304499	RNA-Seq for rhizome of moso bamboo HZP
SAMC3304498	RNA-Seq for rhizome of moso bamboo HZP
SAMC3304497	RNA-Seq for stem of moso bamboo HZP
SAMC3304496	RNA-Seq for stem of moso bamboo HZP
SAMC3304495	RNA-Seq for stem of moso bamboo HZP
SAMC3304494	RNA-Seq for leaf of moso bamboo HZP
SAMC3304493	RNA-Seq for leaf of moso bamboo HZP
SAMC3304492	RNA-Seq for leaf of moso bamboo HZP
SAMC3304491	RNA-Seq for root of moso bamboo HS
SAMC3304490	RNA-Seq for root of moso bamboo HS
SAMC3304489	RNA-Seq for root of moso bamboo HS
SAMC3304488	RNA-Seq for rhizome of moso bamboo HS
SAMC3304487	RNA-Seq for rhizome of moso bamboo HS
SAMC3304486	RNA-Seq for rhizome of moso bamboo HS
SAMC3304485	RNA-Seq for stem of moso bamboo HS
SAMC3304484	RNA-Seq for stem of moso bamboo HS
SAMC3304483	RNA-Seq for stem of moso bamboo HS
SAMC3304482	RNA-Seq for leaf of moso bamboo HS
SAMC3304481	RNA-Seq for leaf of moso bamboo HS
SAMC3304480	RNA-Seq for leaf of moso bamboo HS
SAMC3304479	RNA-Seq for root of moso bamboo HB
SAMC3304478	RNA-Seq for root of moso bamboo HB
SAMC3304477	RNA-Seq for root of moso bamboo HB
SAMC3304476	RNA-Seq for rhizome of moso bamboo HB
SAMC3304475	RNA-Seq for rhizome of moso bamboo HB
SAMC3304474	RNA-Seq for rhizome of moso bamboo HB
SAMC3304473	RNA-Seq for stem of moso bamboo HB
SAMC3304472	RNA-Seq for stem of moso bamboo HB
SAMC3304471	RNA-Seq for stem of moso bamboo HB
SAMC3304470	RNA-Seq for leaf of moso bamboo HB
SAMC3304469	RNA-Seq for leaf of moso bamboo HB
SAMC3304468	RNA-Seq for leaf of moso bamboo HB
SAMC3304467	RNA-Seq for root of moso bamboo DA
SAMC3304466	RNA-Seq for root of moso bamboo DA
SAMC3304465	RNA-Seq for root of moso bamboo DA
SAMC3304464	RNA-Seq for rhizome of moso bamboo DA
SAMC3304463	RNA-Seq for rhizome of moso bamboo DA
SAMC3304462	RNA-Seq for rhizome of moso bamboo DA
SAMC3304461	RNA-Seq for stem of moso bamboo DA
SAMC3304460	RNA-Seq for stem of moso bamboo DA
SAMC3304459	RNA-Seq for stem of moso bamboo DA
SAMC3304458	RNA-Seq for leaf of moso bamboo DA
SAMC3304457	RNA-Seq for leaf of moso bamboo DA
SAMC3304456	RNA-Seq for leaf of moso bamboo DA
SAMC3304455	RNA-Seq for root of moso bamboo CY
SAMC3304454	RNA-Seq for root of moso bamboo CY
SAMC3304453	RNA-Seq for root of moso bamboo CY
SAMC3304452	RNA-Seq for rhizome of moso bamboo CY
SAMC3304451	RNA-Seq for rhizome of moso bamboo CY
SAMC3304450	RNA-Seq for rhizome of moso bamboo CY
SAMC3304449	RNA-Seq for stem of moso bamboo CY
SAMC3304448	RNA-Seq for stem of moso bamboo CY
SAMC3304447	RNA-Seq for stem of moso bamboo CY
SAMC3304446	RNA-Seq for leaf of moso bamboo CY
SAMC3304445	RNA-Seq for leaf of moso bamboo CY
SAMC3304444	RNA-Seq for leaf of moso bamboo CY
SAMC3304443	RNA-Seq for root of moso bamboo CS
SAMC3304442	RNA-Seq for root of moso bamboo CS
SAMC3304441	RNA-Seq for root of moso bamboo CS
SAMC3304440	RNA-Seq for rhizome of moso bamboo CS
SAMC3304439	RNA-Seq for rhizome of moso bamboo CS
SAMC3304438	RNA-Seq for rhizome of moso bamboo CS
SAMC3304437	RNA-Seq for stem of moso bamboo CS
SAMC3304436	RNA-Seq for stem of moso bamboo CS
SAMC3304435	RNA-Seq for stem of moso bamboo CS
SAMC3304434	RNA-Seq for leaf of moso bamboo CS
SAMC3304433	RNA-Seq for leaf of moso bamboo CS
SAMC3304432	RNA-Seq for leaf of moso bamboo CS
SAMC3304431	RNA-Seq for root of moso bamboo AJ
SAMC3304430	RNA-Seq for root of moso bamboo AJ
SAMC3304429	RNA-Seq for root of moso bamboo AJ
SAMC3304428	RNA-Seq for rhizome of moso bamboo AJ
SAMC3304427	RNA-Seq for rhizome of moso bamboo AJ
SAMC3304426	RNA-Seq for rhizome of moso bamboo AJ
SAMC3304425	RNA-Seq for stem of moso bamboo AJ
SAMC3304424	RNA-Seq for stem of moso bamboo AJ
SAMC3304423	RNA-Seq for stem of moso bamboo AJ
SAMC3304422	RNA-Seq for leaf of moso bamboo AJ
SAMC3304421	RNA-Seq for leaf of moso bamboo AJ
SAMC3304420	RNA-Seq for leaf of moso bamboo AJ
SAMC3304419	PacBio Sequel II reads of moso bamboo XN
SAMC3304418	PacBio Sequel II reads of moso bamboo XN
SAMC3304417	PacBio Sequel II reads of moso bamboo HS
SAMC3304416	PacBio Sequel II reads of moso bamboo HS
SAMC3304415	PacBio Sequel II reads of moso bamboo YX
SAMC3304414	PacBio Sequel II reads of moso bamboo YX
SAMC3304413	PacBio Sequel II reads of moso bamboo YX
SAMC3304412	PacBio Sequel II reads of moso bamboo YF
SAMC3304411	PacBio Sequel II reads of moso bamboo YF
SAMC3304410	PacBio Sequel II reads of moso bamboo YF
SAMC3304409	PacBio Sequel II reads of moso bamboo YA
SAMC3304408	PacBio Sequel II reads of moso bamboo YA
SAMC3304407	PacBio Sequel II reads of moso bamboo XA
SAMC3304406	PacBio Sequel II reads of moso bamboo XA
SAMC3304405	PacBio Sequel II reads of moso bamboo WYS
SAMC3304404	PacBio Sequel II reads of moso bamboo WYS
SAMC3304403	PacBio Sequel II reads of moso bamboo WYS
SAMC3304402	PacBio Sequel II reads of moso bamboo JZ
SAMC3304401	PacBio Sequel II reads of moso bamboo JZ
SAMC3304400	PacBio Sequel II reads of moso bamboo DA
SAMC3304399	PacBio Sequel II reads of moso bamboo DA
SAMC3304398	PacBio Sequel II reads of moso bamboo CS
SAMC3304397	PacBio Sequel II reads of moso bamboo CS
SAMC3304396	PacBio Sequel II reads of moso bamboo CS
SAMC3304395	PacBio Sequel II reads of moso bamboo RH
SAMC3304394	PacBio Sequel II reads of moso bamboo RH
SAMC3304393	PacBio Sequel II reads of moso bamboo LY
SAMC3304392	PacBio Sequel II reads of moso bamboo LY
SAMC3304391	PacBio Sequel II reads of moso bamboo LY
SAMC3304390	PacBio Sequel II reads of moso bamboo HZP
SAMC3304389	PacBio Sequel II reads of moso bamboo HZP
SAMC3304388	PacBio Sequel II reads of moso bamboo HB
SAMC3304387	PacBio Sequel II reads of moso bamboo HB
SAMC3304386	PacBio Sequel II reads of moso bamboo CY
SAMC3304385	PacBio Sequel II reads of moso bamboo CY
SAMC3304384	PacBio Sequel II reads of moso bamboo AJ
SAMC3304383	PacBio Sequel II reads of moso bamboo AJ
GSA (1)	-
CRA014344	Haplotype-based pangenomes reveal genetic variations and climate adaptations in moso bamboo populations