Accession

PRJCA023521

Title

16S rRNA sequencing of the root microbiota in Medicago truncatula wild type, LCOs and COs receptor-deficient mutants

Relevance

Agricultural

Data types

Metagenome

Organisms

soil metagenome
root metagenome

Description

To investigate the important role of symbiosis-related LysM pattern-recognition receptors in root microbiota assembly, we conducted 16S rRNA sequencing of the root microbiota in both the wild type and various receptor-deficient mutants of Medicago truncatula. We used three mutants, each deficient in a specific receptor: NFP, responsible for LCO recognition; LYR4, and LYK9, both involved in CO recognition, respectively.

Sample scope

Environment

Release date

2025-05-10

Grants

Agency	program	Grant ID	Grant title
No funding support

Submitter

Jing-Mei Qian (qianjingmei233@126.com)

Organization

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Submission date

2024-02-07

Project Data

Resource name	Description
BioSample (49) show	-
SAMC3368431	16S amplicon sequencing of bulk soil sample SZS6
SAMC3368430	16S amplicon sequencing of bulk soil sample SZS5
SAMC3368429	16S amplicon sequencing of bulk soil sample SZS4
SAMC3368428	16S amplicon sequencing of bulk soil sample SZS3
SAMC3368427	16S amplicon sequencing of bulk soil sample SZS2
SAMC3368426	16S amplicon sequencing of bulk soil sample SZS1
SAMC3368425	16S amplicon sequencing of medicago root microbiota sample SZR108R5
SAMC3368424	16S amplicon sequencing of medicago root microbiota sample SZR108R4
SAMC3368423	16S amplicon sequencing of medicago root microbiota sample SZR108R3
SAMC3368422	16S amplicon sequencing of medicago root microbiota sample SZR108R2
SAMC3368421	16S amplicon sequencing of medicago root microbiota sample SZR108R1
SAMC3368420	16S amplicon sequencing of medicago root microbiota sample SZNFPR5
SAMC3368419	16S amplicon sequencing of medicago root microbiota sample SZNFPR4
SAMC3368418	16S amplicon sequencing of medicago root microbiota sample SZNFPR3
SAMC3368417	16S amplicon sequencing of medicago root microbiota sample SZNFPR2
SAMC3368416	16S amplicon sequencing of medicago root microbiota sample SZNFPR1
SAMC3368415	16S amplicon sequencing of medicago root microbiota sample SZLYR4R5
SAMC3368414	16S amplicon sequencing of medicago root microbiota sample SZLYR4R4
SAMC3368413	16S amplicon sequencing of medicago root microbiota sample SZLYR4R3
SAMC3368412	16S amplicon sequencing of medicago root microbiota sample SZLYR4R2
SAMC3368411	16S amplicon sequencing of medicago root microbiota sample SZLYR4R1
SAMC3368410	16S amplicon sequencing of medicago root microbiota sample SZLYK9R5
SAMC3368409	16S amplicon sequencing of medicago root microbiota sample SZLYK9R4
SAMC3368408	16S amplicon sequencing of medicago root microbiota sample SZLYK9R3
SAMC3368407	16S amplicon sequencing of medicago root microbiota sample SZLYK9R2
SAMC3368406	16S amplicon sequencing of medicago root microbiota sample SZLYK9R1
SAMC3368405	16S amplicon sequencing of bulk soil sample CPS6
SAMC3368404	16S amplicon sequencing of bulk soil sample CPS5
SAMC3368403	16S amplicon sequencing of bulk soil sample CPS4
SAMC3368402	16S amplicon sequencing of bulk soil sample CPS3
SAMC3368401	16S amplicon sequencing of bulk soil sample CPS2
SAMC3368400	16S amplicon sequencing of bulk soil sample CPS1
SAMC3368399	16S amplicon sequencing of medicago root microbiota sample CPR108R4
SAMC3368398	16S amplicon sequencing of medicago root microbiota sample CPR108R3
SAMC3368397	16S amplicon sequencing of medicago root microbiota sample CPR108R2
SAMC3368396	16S amplicon sequencing of medicago root microbiota sample CPR108R1
SAMC3368395	16S amplicon sequencing of medicago root microbiota sample CPNFPR5
SAMC3368394	16S amplicon sequencing of medicago root microbiota sample CPNFPR4
SAMC3368393	16S amplicon sequencing of medicago root microbiota sample CPNFPR3
SAMC3368392	16S amplicon sequencing of medicago root microbiota sample CPNFPR2
SAMC3368391	16S amplicon sequencing of medicago root microbiota sample CPNFPR1
SAMC3368390	16S amplicon sequencing of medicago root microbiota sample CPLYR4R4
SAMC3368389	16S amplicon sequencing of medicago root microbiota sample CPLYR4R3
SAMC3368388	16S amplicon sequencing of medicago root microbiota sample CPLYR4R2
SAMC3368387	16S amplicon sequencing of medicago root microbiota sample CPLYR4R1
SAMC3368386	16S amplicon sequencing of medicago root microbiota sample CPLYK9R4
SAMC3368385	16S amplicon sequencing of medicago root microbiota sample CPLYK9R3
SAMC3368384	16S amplicon sequencing of medicago root microbiota sample CPLYK9R2
SAMC3368383	16S amplicon sequencing of medicago root microbiota sample CPLYK9R1
GSA (1)	-
CRA014900	16S rRNA sequencing of the root microbiota in Medicago truncatula wild type, LCOs and COs receptor-deficient mutants