项目编号

PRJCA024515

项目标题

rice genus super pangenome

涉及领域

Agricultural

数据类型

Whole genome sequencing
Transcriptome or Gene expression
Genome sequencing and assembly
Raw sequence reads
Genome sequencing
Assembly

物种名称

Oryza minuta
Oryza latifolia
Oryza malampuzhaensis
Oryza brachyantha
Oryza punctata
Oryza eichingeri
Oryza glumipatula
Oryza rhizomatis
Oryza grandiglumis
Oryza meyeriana
Oryza australiensis
Oryza alta
Oryza officinalis

描述信息

This project is to construct a super pan-genome of Oryza, including HIFI, HIC and transcriptome data(second and third generation sequencing) of 13 wild rice.

样品范围

Multispecies

发布日期

2024-10-25

出版信息

PubMed ID	文章标题	杂志名称	Doi	发表年份
39557856	Genome evolution and diversity of wild and cultivated rice species	Nature Communications	10.1038/s41467-024-54427-3	2024

项目资金来源

机构	项目类型	授权项目ID	授权项目名称
China Agriculture Research System	Major Program	CARS-01-09	wild rice utilization
Jiangxi Provincial Natural Science Foundation	Youth Fund	20224BAB215008	Study on genomic variation and allelic expression pattern of allotetraploid small-grained wild rice

提交者

Weixiong Long (longweixiong1219@163.com)

提交单位

Jiangxi Super Rice Research and Development Center, Jiangxi Academy of Agricultural Sciences

提交日期

2024-03-20

项目包含数据信息

资源名称	描述
BioSample (240) show	-
SAMC4143460	W-97-l-3
SAMC4143459	W-97-l-2
SAMC4143458	W-97-l-1
SAMC4143457	W-97-p-3
SAMC4143456	W-97-p-2
SAMC4143455	W-97-p-1
SAMC4143454	W-97-p-1
SAMC4143453	W-97-s-3
SAMC4143452	W-97-s-2
SAMC4143451	W-97-s-1
SAMC4143450	W-97-r-3
SAMC4143449	W-97-r-3
SAMC4143448	W-97-r-2
SAMC4143447	W-97-r-1
SAMC4143446	W-71-l-3
SAMC4143445	W-71-l-3
SAMC4143444	W-71-l-2
SAMC4143443	W-71-l-2
SAMC4143442	W-71-l-1
SAMC4143441	W-71-p-3
SAMC4143440	W-71-p-2
SAMC4143439	W-71-p-1
SAMC4143438	W-71-s-3
SAMC4143437	W-71-s-2
SAMC4143436	W-71-s-1
SAMC4143435	W-71-r-3
SAMC4143434	W-71-r-2
SAMC4143433	W-71-r-1
SAMC4143432	W-59-l-3
SAMC4143431	W-59-l-3
SAMC4143430	W-59-l-2
SAMC4143429	W-59-l-1
SAMC4143428	W-59-p-3
SAMC4143427	W-59-p-2
SAMC4143426	W-59-p-1
SAMC4143425	W-59-s-3
SAMC4143424	W-59-s-2
SAMC4143423	W-59-s-1
SAMC4143422	W-59-r-3
SAMC4143421	W-59-r-2
SAMC4143420	W-59-r-1
SAMC4143419	W-375-l-3
SAMC4143418	W-375-l-2
SAMC4143417	W-375-l-1
SAMC4143416	W-375-p-3
SAMC4143415	W-375-p-2
SAMC4143414	W-375-p-1
SAMC4143413	W-375-s-3
SAMC4143412	W-375-s-2
SAMC4143411	W-375-s-1
SAMC4143410	W-375-r-3
SAMC4143409	W-375-r-2
SAMC4143408	W-375-r-1
SAMC4143407	W-363-l-3
SAMC4143406	W-363-l-2
SAMC4143405	W-363-l-1
SAMC4143404	W-363-p-3
SAMC4143403	W-363-p-2
SAMC4143402	W-363-p-1
SAMC4143401	W-363-s-3
SAMC4143400	W-363-s-2
SAMC4143399	W-363-s-1
SAMC4143398	W-363-r-3
SAMC4143397	W-363-r-2
SAMC4143396	W-363-r-1
SAMC4143395	W-323-l-3
SAMC4143394	W-323-l-2
SAMC4143393	W-323-l-1
SAMC4143392	W-323-p-3
SAMC4143391	W-323-p-2
SAMC4143390	W-323-p-1
SAMC4143389	W-323-s-3
SAMC4143388	W-323-s-2
SAMC4143387	W-323-s-1
SAMC4143386	W-323-r-3
SAMC4143385	W-323-r-2
SAMC4143384	W-323-r-1
SAMC4143383	W-26-l-3
SAMC4143382	W-26-l-2
SAMC4143381	W-26-l-1
SAMC4143380	W-26-p-3
SAMC4143379	W-26-p-2
SAMC4143378	W-26-p-1
SAMC4143377	W-26-s-3
SAMC4143376	W-26-s-2
SAMC4143375	W-26-s-1
SAMC4143374	W-26-r-3
SAMC4143373	W-26-r-2
SAMC4143372	W-26-r-1
SAMC4143371	W-190-l-3
SAMC4143370	W-190-l-2
SAMC4143369	W-190-l-2
SAMC4143368	W-190-l-1
SAMC4143367	W-190-l-1
SAMC4143366	W-190-p-3
SAMC4143365	W-190-p-2
SAMC4143364	W-190-p-1
SAMC4143363	W-190-s-3
SAMC4143362	W-190-s-2
SAMC4143361	W-190-s-1
SAMC4143360	W-190-r-3
SAMC4143359	W-190-r-2
SAMC4143358	W-190-r-1
SAMC4143357	W-18-l-3
SAMC4143356	W-18-l-2
SAMC4143355	W-18-l-1
SAMC4143354	W-18-p-3
SAMC4143353	W-18-p-2
SAMC4143352	W-18-p-1
SAMC4143351	W-18-s-3
SAMC4143350	W-18-s-2
SAMC4143349	W-18-s-1
SAMC4143348	W-18-r-3
SAMC4143347	W-18-r-2
SAMC4143346	W-18-r-1
SAMC4143345	W-171-l-3
SAMC4143344	W-171-l-2
SAMC4143343	W-171-l-1
SAMC4143342	W-171-p-3
SAMC4143341	W-171-p-2
SAMC4143340	W-171-p-1
SAMC4143339	W-171-s-3
SAMC4143338	W-171-s-2
SAMC4143337	W-171-s-1
SAMC4143336	W-171-r-3
SAMC4143335	W-171-r-2
SAMC4143334	W-171-r-1
SAMC4143333	W-128-l-3
SAMC4143332	W-128-l-2
SAMC4143331	W-128-l-1
SAMC4143330	W-128-p-3
SAMC4143329	W-128-p-2
SAMC4143328	W-128-p-1
SAMC4143327	W-128-s-3
SAMC4143326	W-128-s-2
SAMC4143325	W-128-s-1
SAMC4143324	W-128-r-3
SAMC4143323	W-128-r-2
SAMC4143322	W-128-r-1
SAMC4143321	W-100-l-3
SAMC4143320	W-100-l-2
SAMC4143319	W-100-l-1
SAMC4143318	W-100-p-3
SAMC4143317	W-100-p-2
SAMC4143316	W-100-p-1
SAMC4143315	W-100-s-3
SAMC4143314	W-100-s-2
SAMC4143313	W-100-s-1
SAMC4143312	W-100-r-3
SAMC4143311	W-100-r-2
SAMC4143310	W-100-r-1
SAMC4143309	M-6-root
SAMC4131962	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131961	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131960	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131959	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131958	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131957	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131956	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131955	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131954	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131953	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131952	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131951	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC4131950	Iso-Seq of the mix of leaf, root, stem, and spikelete:O. alta
SAMC3721083	W375-p
SAMC3721082	W363-p
SAMC3721081	W323-p
SAMC3721080	W190-p
SAMC3721079	W171-p
SAMC3721078	W128-p
SAMC3721077	W100-p
SAMC3721076	W97-p
SAMC3721075	W71-p
SAMC3721074	W59-p
SAMC3721073	W26-p
SAMC3721072	W18-p
SAMC3721071	W375-s
SAMC3721070	W363-s
SAMC3721069	W323-s
SAMC3721068	W190-s
SAMC3721067	W171-s
SAMC3721066	W128-s
SAMC3721065	W100-s
SAMC3721064	W97-s
SAMC3721063	W71-s
SAMC3721062	W59-s
SAMC3721061	W26-s
SAMC3721060	W18-s
SAMC3721059	W375-l
SAMC3721058	W363-l
SAMC3721057	W323-l
SAMC3721056	W190-l
SAMC3721055	W171-l
SAMC3721054	W128-l
SAMC3721053	W100-l
SAMC3721052	W97-l
SAMC3721051	W71-l
SAMC3721050	W59-l
SAMC3721049	W26-l
SAMC3721048	W18-l
SAMC3721047	M6_r
SAMC3721046	W375_r
SAMC3721045	W363_r
SAMC3721044	W323_r
SAMC3721043	W190_r
SAMC3721042	W171_r
SAMC3721041	W128_r
SAMC3721040	W100_r
SAMC3721039	W97_r
SAMC3721038	W71_r
SAMC3721037	W59_r
SAMC3721036	W26_r
SAMC3721035	W18_r
SAMC3721034	M6
SAMC3721033	W375
SAMC3721032	W363
SAMC3721031	W323
SAMC3721030	W190
SAMC3721029	W171
SAMC3721028	W128
SAMC3721027	W100
SAMC3721026	W97
SAMC3721025	W71
SAMC3721024	W59
SAMC3721023	W26
SAMC3721022	W18
SAMC3478894	M_6
SAMC3478893	W_375
SAMC3478892	W_363
SAMC3478891	W_323
SAMC3478890	W_190
SAMC3478889	W_171
SAMC3478888	W_128
SAMC3478887	W_100
SAMC3478886	W_97
SAMC3478885	W_71
SAMC3478884	W_59
SAMC3478883	W_26
SAMC3478882	W_18
GSA (5)	-
CRA016448	RNA sequencing of wild rice
CRA016447	wild rice HIC data
CRA015552	wild rice HIFI data
CRA018970	wild rice ISO sequencing
CRA019072	RNA sequencing of 13 wild rice