项目编号 PRJCA025117
项目标题 Genomic insights into the mechanism of plant diversification driven by environmental heterogeneity of different riverine ecosystems
涉及领域 Environmental
数据类型 Whole genome sequencing
物种名称 Debregeasia orientalis
描述信息 Rivers have intrigued researchers for centuries due to the most diverse, dynamic, and productive ecosystems on earth. Yet, mechanism of plant diversification driven by river systems remains largely unknown. Debregeasia orientalis, an endemic species to East Asia, and distributing along water flow, provided powerful study system to address this issue. In this study, we generated a chromosome-scale de novo genome assembly of D. orientalis, and produced whole-genome sequences from 332 accessions, then integrate population genomic techniques with ecological analysis, we found that three groups should be considered within D. orientalis, and they distributed along three distinguished river systems, supporting riverine landscape affects species differentiation; Furthermore, we revealed that the Pleistocene climate changes drove lineage diversification isolated in micro-refugia, indicating that climate changes trigger complex ecological responses in river ecosystems. Additionally, we uncovered that D. orientalis has different ecological niches in different river systems, and the key ecological factors determining these niches are identified, suggesting different selective pressures were produced to plants along the different rivers. Overall, morphodynamics vary and climate change produced various ecological habitats for different rivers, under different selective pressures, same species started to differentiate among different river systems, combining with effect of climate change, which formed different species over long time, eventually resulting in the extremely high biodiversity of river systems on Earth. This study expands our understanding of mechanism of plant diversification driven by river systems by the largest genomic data of plant to date, and contributes to a growing body of knowledge on the relationships between plant and river that will facilitate continued efforts including the formation of biodiversity on Earth.
样品范围 Multiisolate
发布日期 2025-02-06
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) 42171071
提交者 Zengyuan Wu (wuzengyuan@mail.kib.ac.cn)
提交单位 Kunming Institute of Botany, Chinese Academy of Sciences
提交日期 2024-03-30

项目包含数据信息

资源名称 描述
BioSample (334)  show -
GSA (1) -
CRA016271 Debregeasia resequencing