项目编号 PRJCA025219
项目标题 Universal droplet microfluidics-based combinatorial indexing for massive-scale multimodal single-cell sequencing
涉及领域 Biology
数据类型 Single cell sequencing
物种名称 Homo sapiens
描述信息 Droplet microfluidics based single-cell combinatorial indexing sequencing represents an attractive way to balance cost, scalability, robustness, and accessibility. However, current methods need a tailored protocol for specific modality respectively, which may limit their potential of automation. Here, we introduce UDA-seq, universal droplet microfluidics based combinatorial indexing for massive-scale single-cell multimodal sequencing. We demonstrate that when necessary, UDA-seq enables effectively generating more than 100,000 single-cell data in a single-channel experiment of droplet microfluidics. Meanwhile, UDA-seq provides a universal workflow for accomplishing several multimodal tasks, including single-cell co-assay of RNA and VDJ, RNA and ATAC, and RNA and CRISPR guide RNA. Our approach represents a broadly applicable strategy for boosting the throughput and systematically "rewriting" most of existing droplet microfluidics based single-cell multimodal methods.
样品范围 Single cell
发布日期 2024-06-15
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
39833568 UDA-seq: universal droplet microfluidics-based combinatorial indexing for massive-scale multimodal single-cell sequencing Nature Methods 10.1038/s41592-024-02586-y 2025
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
International Partnership Program of the Chinese Academy of Sciences 153F11KYSB20210006
The National Key Research and Development Program of China 2019YFA0801702
The Strategic Priority Research Program of the Chinese Academy of Sciences XDB38020500
提交者 Jiang Lan (jiangl@big.ac.cn)
提交单位 Beijing Institute of Genomics, Chinese Academy of Sciences
提交日期 2024-04-11

项目包含数据信息

资源名称 描述
BioSample (102)  show -