Accession PRJCA025591
Title Integrated Proteomics and Metabolomics Analysis of Sclerosis-Related Proteins and Femoral Head Necrosis Following Internal Fixation of Femoral Neck Fractures
Relevance Medical
Data types metabonomics
Organisms Homo sapiens
Description Nexera ultra-high-performance liquid chromatograph (SHIMADZU, Kyoto, JAPAN) hyphenated with Q-Exactive high-resolution tandem mass spectrometer equipped with heated electrospray ionization (ESI) source (Thermo Fisher Scientific, Waltham, MA, USA) was used to analyze the metabolic profiling in both ESI positive and ESI negative ion modes. An ACQUITY UPLC HSS T3 columnwas employed in positive and negative modes. The binary gradient elution system consisted of (A) water (containing 0.1% formic acid, v/v) and (B) ACN (containing 0.1 % formic acid, v/v) and separation was achieved using the following gradient: 0.01 min, 5% B; 2 min, 5% B; 4 min, 30% B; 8 min, 50% B; 10 min, 80% B; 14 min, 100% B; 15 min, 100% B; 15.1 min, 5% and 16 min, 5% B. The flow rate was 0.35 mL/min, and the column temperature was 45.All the samples were kept at 10 during the analysis. The injection volume was 2 μL.The mass range was from m/z 100 to 1200. The resolution was set at 70,000 for the full MS scans and 17,500 for HCD MS/MS scans. The collision energy was set at 10, 20, and 40 eV. The mass spectrometer operated as follows: spray voltage, 3500 V (+) and 3000 V -; sheath gas flow rate, 35 arbitrary units; auxiliary gas flow rate, 8 arbitrary units; capillary temperature, 320; Aux gas heater temperature, 350; S-lens RF level, 50.
Sample scope Multiisolate
Release date 2024-05-03
Publication
PubMed ID Article title Journal name DOI Year
38851808 Integrated proteomics and metabolomics analysis of sclerosis-related proteins and femoral head necrosis following internal fixation of femoral neck fractures Scientific Reports 10.1038/s41598-024-63837-8 2024
Grants
Agency program Grant ID Grant title
Central Government Guides Local Science and Technology Development Funds No.YDZJSX2022B011
the National Natural Science Foundation of China 51805475
National Natural Science Foundation of China 82172503
Shanxi Province key research and development project 202202150401019
Submitter Wangping Duan (dwpsc2004121@163.com)
Organization Second Hospital of Shanxi Medical University
Submission date 2024-04-24

Project Data

Resource name Description