Accession

PRJCA026847

Title

A Cattle BodyMap of Transcriptome across Tissues and Developmental Stages Deciphers Genetic Architecture of Production Traits in Beef Cattle

Relevance

Model organism

Data types

Transcriptome or Gene expression

Organisms

Bos taurus

Description

Our project involved creating a comprehensive transcriptomic BodyMap for cattle by analyzing gene expression, alternative splicing, and RNA editing across 46 and 49 organs of newborn and young cattle using 256 samples. We identified thousands of genes, novel long non-coding RNAs, alternative splicing events, and RNA-editing sites. By integrating different analyses with beef production and quality traits, we found insights into gene expression patterns and their associations with specific traits.

Sample scope

Monoisolate

Release date

2024-07-10

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China (NSFC)		31972554

Submitter

Linxi Zhu (2023055440@nwafu.edu.cn)

Organization

Institute of animal sciences of CAAS

Submission date

2024-06-06

Project Data

Resource name	Description
BioSample (278) show	-
SAMC3816641	WGS of adult cattle
SAMC3816640	WGS of adult cattle
SAMC3816639	WGS of adult cattle
SAMC3816638	WGS of young cattle
SAMC3816637	WGS of young cattle
SAMC3816636	WGS of young cattle
SAMC3816635	WGS of newborn cattle
SAMC3816634	WGS of newborn cattle
SAMC3816633	WGS of newborn cattle
SAMC3812245	RNA-Seq of young cattle
SAMC3812244	RNA-Seq of young cattle
SAMC3812243	RNA-Seq of young cattle
SAMC3812242	RNA-Seq of young cattle
SAMC3812241	RNA-Seq of young cattle
SAMC3812240	RNA-Seq of young cattle
SAMC3812239	RNA-Seq of young cattle
SAMC3812238	RNA-Seq of young cattle
SAMC3812237	RNA-Seq of young cattle
SAMC3812236	RNA-Seq of young cattle
SAMC3812235	RNA-Seq of young cattle
SAMC3812234	RNA-Seq of young cattle
SAMC3812233	RNA-Seq of young cattle
SAMC3812232	RNA-Seq of young cattle
SAMC3812231	RNA-Seq of young cattle
SAMC3812230	RNA-Seq of young cattle
SAMC3812229	RNA-Seq of young cattle
SAMC3812228	RNA-Seq of young cattle
SAMC3812227	RNA-Seq of young cattle
SAMC3812226	RNA-Seq of young cattle
SAMC3812225	RNA-Seq of young cattle
SAMC3812224	RNA-Seq of young cattle
SAMC3812223	RNA-Seq of young cattle
SAMC3812222	RNA-Seq of young cattle
SAMC3812221	RNA-Seq of young cattle
SAMC3812220	RNA-Seq of young cattle
SAMC3812219	RNA-Seq of young cattle
SAMC3812218	RNA-Seq of young cattle
SAMC3812217	RNA-Seq of young cattle
SAMC3812216	RNA-Seq of young cattle
SAMC3812215	RNA-Seq of young cattle
SAMC3812214	RNA-Seq of young cattle
SAMC3812213	RNA-Seq of young cattle
SAMC3812212	RNA-Seq of young cattle
SAMC3812211	RNA-Seq of young cattle
SAMC3812210	RNA-Seq of young cattle
SAMC3812209	RNA-Seq of young cattle
SAMC3812208	RNA-Seq of young cattle
SAMC3812207	RNA-Seq of young cattle
SAMC3812206	RNA-Seq of young cattle
SAMC3812205	RNA-Seq of young cattle
SAMC3812204	RNA-Seq of young cattle
SAMC3812203	RNA-Seq of young cattle
SAMC3812202	RNA-Seq of young cattle
SAMC3812201	RNA-Seq of young cattle
SAMC3812200	RNA-Seq of young cattle
SAMC3812199	RNA-Seq of young cattle
SAMC3812198	RNA-Seq of young cattle
SAMC3812197	RNA-Seq of young cattle
SAMC3812196	RNA-Seq of young cattle
SAMC3812195	RNA-Seq of young cattle
SAMC3812194	RNA-Seq of young cattle
SAMC3812193	RNA-Seq of young cattle
SAMC3812192	RNA-Seq of young cattle
SAMC3812191	RNA-Seq of young cattle
SAMC3812190	RNA-Seq of young cattle
SAMC3812189	RNA-Seq of young cattle
SAMC3812188	RNA-Seq of young cattle
SAMC3812187	RNA-Seq of young cattle
SAMC3812186	RNA-Seq of young cattle
SAMC3812185	RNA-Seq of young cattle
SAMC3812184	RNA-Seq of young cattle
SAMC3812183	RNA-Seq of young cattle
SAMC3812182	RNA-Seq of young cattle
SAMC3812181	RNA-Seq of young cattle
SAMC3812180	RNA-Seq of young cattle
SAMC3812179	RNA-Seq of young cattle
SAMC3812178	RNA-Seq of young cattle
SAMC3812177	RNA-Seq of young cattle
SAMC3812176	RNA-Seq of young cattle
SAMC3812175	RNA-Seq of young cattle
SAMC3812174	RNA-Seq of young cattle
SAMC3812173	RNA-Seq of young cattle
SAMC3812172	RNA-Seq of young cattle
SAMC3812171	RNA-Seq of young cattle
SAMC3812170	RNA-Seq of young cattle
SAMC3812169	RNA-Seq of young cattle
SAMC3812168	RNA-Seq of young cattle
SAMC3812167	RNA-Seq of young cattle
SAMC3812166	RNA-Seq of young cattle
SAMC3812165	RNA-Seq of young cattle
SAMC3812164	RNA-Seq of young cattle
SAMC3812163	RNA-Seq of young cattle
SAMC3812162	RNA-Seq of young cattle
SAMC3812161	RNA-Seq of young cattle
SAMC3812160	RNA-Seq of young cattle
SAMC3812159	RNA-Seq of young cattle
SAMC3812158	RNA-Seq of young cattle
SAMC3812157	RNA-Seq of young cattle
SAMC3812156	RNA-Seq of young cattle
SAMC3812155	RNA-Seq of young cattle
SAMC3812154	RNA-Seq of young cattle
SAMC3812153	RNA-Seq of young cattle
SAMC3812152	RNA-Seq of young cattle
SAMC3812151	RNA-Seq of young cattle
SAMC3812150	RNA-Seq of young cattle
SAMC3812149	RNA-Seq of young cattle
SAMC3812148	RNA-Seq of young cattle
SAMC3812147	RNA-Seq of young cattle
SAMC3812146	RNA-Seq of young cattle
SAMC3812145	RNA-Seq of young cattle
SAMC3812144	RNA-Seq of young cattle
SAMC3812143	RNA-Seq of young cattle
SAMC3812142	RNA-Seq of young cattle
SAMC3812141	RNA-Seq of young cattle
SAMC3812140	RNA-Seq of young cattle
SAMC3812139	RNA-Seq of young cattle
SAMC3812138	RNA-Seq of young cattle
SAMC3812137	RNA-Seq of young cattle
SAMC3812136	RNA-Seq of young cattle
SAMC3812135	RNA-Seq of young cattle
SAMC3812134	RNA-Seq of young cattle
SAMC3812133	RNA-Seq of young cattle
SAMC3812132	RNA-Seq of young cattle
SAMC3812131	RNA-Seq of young cattle
SAMC3812130	RNA-Seq of young cattle
SAMC3812129	RNA-Seq of young cattle
SAMC3812128	RNA-Seq of young cattle
SAMC3812127	RNA-Seq of young cattle
SAMC3812126	RNA-Seq of young cattle
SAMC3812125	RNA-Seq of young cattle
SAMC3812124	RNA-Seq of young cattle
SAMC3812123	RNA-Seq of young cattle
SAMC3812122	RNA-Seq of young cattle
SAMC3812121	RNA-Seq of young cattle
SAMC3812120	RNA-Seq of young cattle
SAMC3812119	RNA-Seq of young cattle
SAMC3812118	RNA-Seq of young cattle
SAMC3812117	RNA-Seq of young cattle
SAMC3812116	RNA-Seq of young cattle
SAMC3812115	RNA-Seq of young cattle
SAMC3812114	RNA-Seq of young cattle
SAMC3812113	RNA-Seq of young cattle
SAMC3812112	RNA-Seq of young cattle
SAMC3812111	RNA-Seq of young cattle
SAMC3812110	RNA-Seq of young cattle
SAMC3812109	RNA-Seq of young cattle
SAMC3812108	RNA-Seq of young cattle
SAMC3812107	RNA-Seq of young cattle
SAMC3812106	RNA-Seq of young cattle
SAMC3812105	RNA-Seq of young cattle
SAMC3812104	RNA-Seq of young cattle
SAMC3812103	RNA-Seq of young cattle
SAMC3812102	RNA-Seq of young cattle
SAMC3812101	RNA-Seq of young cattle
SAMC3810903	RNA-Seq of newborn cattle
SAMC3810902	RNA-Seq of newborn cattle
SAMC3810901	RNA-Seq of newborn cattle
SAMC3810900	RNA-Seq of newborn cattle
SAMC3810899	RNA-Seq of newborn cattle
SAMC3810898	RNA-Seq of newborn cattle
SAMC3810897	RNA-Seq of newborn cattle
SAMC3810896	RNA-Seq of newborn cattle
SAMC3810895	RNA-Seq of newborn cattle
SAMC3810894	RNA-Seq of newborn cattle
SAMC3810893	RNA-Seq of newborn cattle
SAMC3810892	RNA-Seq of newborn cattle
SAMC3810891	RNA-Seq of newborn cattle
SAMC3810890	RNA-Seq of newborn cattle
SAMC3810889	RNA-Seq of newborn cattle
SAMC3810888	RNA-Seq of newborn cattle
SAMC3810887	RNA-Seq of newborn cattle
SAMC3810886	RNA-Seq of newborn cattle
SAMC3810885	RNA-Seq of newborn cattle
SAMC3810884	RNA-Seq of newborn cattle
SAMC3810883	RNA-Seq of newborn cattle
SAMC3810882	RNA-Seq of newborn cattle
SAMC3810881	RNA-Seq of newborn cattle
SAMC3810880	RNA-Seq of newborn cattle
SAMC3810879	RNA-Seq of newborn cattle
SAMC3810878	RNA-Seq of newborn cattle
SAMC3810877	RNA-Seq of newborn cattle
SAMC3810876	RNA-Seq of newborn cattle
SAMC3810875	RNA-Seq of newborn cattle
SAMC3810874	RNA-Seq of newborn cattle
SAMC3810873	RNA-Seq of newborn cattle
SAMC3810872	RNA-Seq of newborn cattle
SAMC3810871	RNA-Seq of newborn cattle
SAMC3810870	RNA-Seq of newborn cattle
SAMC3810869	RNA-Seq of newborn cattle
SAMC3810868	RNA-Seq of newborn cattle
SAMC3810867	RNA-Seq of newborn cattle
SAMC3810866	RNA-Seq of newborn cattle
SAMC3810865	RNA-Seq of newborn cattle
SAMC3810864	RNA-Seq of newborn cattle
SAMC3810863	RNA-Seq of newborn cattle
SAMC3810862	RNA-Seq of newborn cattle
SAMC3810861	RNA-Seq of newborn cattle
SAMC3810860	RNA-Seq of newborn cattle
SAMC3810859	RNA-Seq of newborn cattle
SAMC3810858	RNA-Seq of newborn cattle
SAMC3810857	RNA-Seq of newborn cattle
SAMC3810856	RNA-Seq of newborn cattle
SAMC3810855	RNA-Seq of newborn cattle
SAMC3810854	RNA-Seq of newborn cattle
SAMC3810853	RNA-Seq of newborn cattle
SAMC3810852	RNA-Seq of newborn cattle
SAMC3810851	RNA-Seq of newborn cattle
SAMC3810850	RNA-Seq of newborn cattle
SAMC3810849	RNA-Seq of newborn cattle
SAMC3810848	RNA-Seq of newborn cattle
SAMC3810847	RNA-Seq of newborn cattle
SAMC3810846	RNA-Seq of newborn cattle
SAMC3810845	RNA-Seq of newborn cattle
SAMC3810844	RNA-Seq of newborn cattle
SAMC3810843	RNA-Seq of newborn cattle
SAMC3810842	RNA-Seq of newborn cattle
SAMC3810841	RNA-Seq of newborn cattle
SAMC3810840	RNA-Seq of newborn cattle
SAMC3810839	RNA-Seq of newborn cattle
SAMC3810838	RNA-Seq of newborn cattle
SAMC3810837	RNA-Seq of newborn cattle
SAMC3810836	RNA-Seq of newborn cattle
SAMC3810835	RNA-Seq of newborn cattle
SAMC3810834	RNA-Seq of newborn cattle
SAMC3810833	RNA-Seq of newborn cattle
SAMC3810832	RNA-Seq of newborn cattle
SAMC3810831	RNA-Seq of newborn cattle
SAMC3810830	RNA-Seq of newborn cattle
SAMC3810829	RNA-Seq of newborn cattle
SAMC3810828	RNA-Seq of newborn cattle
SAMC3810827	RNA-Seq of newborn cattle
SAMC3810826	RNA-Seq of newborn cattle
SAMC3810825	RNA-Seq of newborn cattle
SAMC3810824	RNA-Seq of newborn cattle
SAMC3810823	RNA-Seq of newborn cattle
SAMC3810822	RNA-Seq of newborn cattle
SAMC3810821	RNA-Seq of newborn cattle
SAMC3810820	RNA-Seq of newborn cattle
SAMC3810819	RNA-Seq of newborn cattle
SAMC3810818	RNA-Seq of newborn cattle
SAMC3810817	RNA-Seq of newborn cattle
SAMC3810816	RNA-Seq of newborn cattle
SAMC3810815	RNA-Seq of newborn cattle
SAMC3810814	RNA-Seq of newborn cattle
SAMC3810813	RNA-Seq of newborn cattle
SAMC3810812	RNA-Seq of newborn cattle
SAMC3810811	RNA-Seq of newborn cattle
SAMC3810810	RNA-Seq of newborn cattle
SAMC3810809	RNA-Seq of newborn cattle
SAMC3810808	RNA-Seq of newborn cattle
SAMC3810807	RNA-Seq of newborn cattle
SAMC3810806	RNA-Seq of newborn cattle
SAMC3810805	RNA-Seq of newborn cattle
SAMC3810804	RNA-Seq of newborn cattle
SAMC3810803	RNA-Seq of newborn cattle
SAMC3810802	RNA-Seq of newborn cattle
SAMC3810801	RNA-Seq of newborn cattle
SAMC3810800	RNA-Seq of newborn cattle
SAMC3810799	RNA-Seq of newborn cattle
SAMC3810798	RNA-Seq of newborn cattle
SAMC3810797	RNA-Seq of newborn cattle
SAMC3810796	RNA-Seq of newborn cattle
SAMC3810795	RNA-Seq of newborn cattle
SAMC3810794	RNA-Seq of newborn cattle
SAMC3810793	RNA-Seq of newborn cattle
SAMC3810792	RNA-Seq of newborn cattle
SAMC3810791	RNA-Seq of newborn cattle
SAMC3810790	RNA-Seq of newborn cattle
SAMC3810789	RNA-Seq of newborn cattle
SAMC3810788	RNA-Seq of newborn cattle
SAMC3810787	RNA-Seq of newborn cattle
SAMC3810786	RNA-Seq of newborn cattle
SAMC3810785	RNA-Seq of newborn cattle
SAMC3810784	RNA-Seq of newborn cattle
SAMC3810783	RNA-Seq of newborn cattle
SAMC3810782	RNA-Seq of newborn cattle
SAMC3810781	RNA-Seq of newborn cattle
SAMC3810780	RNA-Seq of newborn cattle
GSA (3)	-
CRA017018	A Cattle BodyMap of Transcriptome across Tissues and Developmental Stages Deciphers Genetic Architecture of Production Traits in Beef Cattle(genome)
CRA017003	A Cattle BodyMap of Transcriptome across Tissues and Developmental Stages Deciphers Genetic Architecture of Production Traits in Beef Cattle (young)
CRA016956	A Cattle BodyMap of Transcriptome across Tissues and Developmental Stages Deciphers Genetic Architecture of Production Traits in Beef Cattle(newborn)