Accession PRJCA028542
Title The dysregulation of lipid metabolism mediated by PPARα / FABP1 / SCD1 signaling triggered ferroptosis involved radiation-induced liver damage
Relevance Medical
Data types metabonomics
Organisms Mus musculus
Description The analytical instrument used in this study was a Dionex U3000 UHPLC (ultra-high-performance liquid chromatography system) coupled with a QE Plus high-resolution mass spectrometer. For metabolite extraction, 20 μL of 2-chloro-l-phenylalanine (0.3 mg/mL) dissolved in methanol, serving as the internal standard, and 1 mL of a methanol:water mixture (4: 1=v: v) were added to each sample. The resulting mixture was then transferred to a 4 mL glass vial. Subsequently, 200 μL of trichloromethane were subsequently added to each aliquot to disperse the sample using a pipette. The cells were disrupted using an ultrasonic homogenizer at 500 watts for 6 min.All of the mixtures from each sample were transferred to 1.5 mL Eppendorf tubes and extracted by ultrasonication for 20 min in an ice water bath. The resulting extract was centrifuged at 13,000 rpm and 4 for 10 min. Thereafter, 1 mL of the supernatant was then dried in a freeze concentration centrifugal dryer in a glass vial. A volume of 200 μL of a methanol-water mixture (1:4, vol/vol) was added to each sample, which were then vortexed for 30 s and placed at 4°C for 2 min.Subsequently, the samples were centrifuged at 13,000 rpm and 4°C for 15 min. The supernatants (150 μL) from each tube were collected using crystal syringes, filtered through 0.22 μm microfilters, and transferred to LC vials. The vials were stored at -80°C until LC-MS analysis.The acquired LC-MS raw data were analyzed using the Progqenesis QI software (Waters Corporation, Milford, USA). Metabolites were identified using the Progenesis QI Data Processing Software (Waters Corporation, Milford, USA), which employs a combination of public databases, including http://www.hmdb.ca/ and http://www.lipidmaps.org/, and self-built databases. All of the aforementioned analyses were conducted by OE Biotech (Shanghai, China)
Sample scope Monoisolate
Release date 2024-07-26
Grants
Agency program Grant ID Grant title
National Key R&D Program of China 2022YFC2503700
National Key R&D Program of China 2022YFC2503703
Natural Science Fund of Shandong Province ZR2023QH451
Postgraduate Research & Practice Innovation Program of Jiangsu Province KYCX23-3262
Key scientific research projects of Jiangsu Provincial Health Commission ZD2021053
the Wuxi double hundred young and middle-aged medical and health top-notch talent project No.202014
Project of Scientific and Technological Innovation of Nuclear Medicine ZHYLYB2021012
Project of Scientific and Technological Innovation of Nuclear Medicine ZHYLZD2021004
the National Health Commission (NHC) Key Laboratory of Nuclear Technology Medical Transformation 2023HYX005
Submitter KaiXiao Zhou (17712664003@163.com)
Organization Soochow University
Submission date 2024-07-26

Project Data

Resource name Description