项目编号 PRJCA030492
项目标题 The dynamically evolving cell states and ecosystem from benign nevi to melanoma
涉及领域 Medical
数据类型 Single cell sequencing
物种名称 Homo sapiens
描述信息 Approximately 30% of non-chronically sun-damaged melanomas originate from nevi, yet the dynamic changes and crucial mechanisms driving the transition from benign nevi to melanoma remain elusive. Here, we performed single-cell transcriptome sequencing on multiple paired tissue sites from 5 patients diagnosed with melanoma arising in congenital melanocytic nevi (CMN), identifying four distinct states of melanocyte subpopulations during the progression from nevi to melanoma, characterized by dynamic changes in their composition, functions, malignancy, and regulatory pathways. In the nevi state, interferon regulatory factor 1 (IRF1) was specifically upregulated in melanocytes, fibroblasts, and endothelial cells (ECs), potentially activating immune surveillance in the microenvironment. This underscores a critical factor in preserving the benign state of nevi and averting malignant transformation. Conversely, the critical inhibitory checkpoint HLA-E for NK cells exhibited high expression in a cluster of malignant melanocytes and fibroblasts enriched in melanoma. This interaction with ligands expressed on NK cells could potentially serve as a key factor leading to immune evasion. In malignant melanoma samples, we detected high expression of Midkine (MDK) in melanocytes. It is a pivotal factor that facilitates melanoma invasion and malignant transformation, potentially through interaction with ECs to stimulate angiogenesis. The targets identified in our study are crucial factors in detecting the malignant transformation of nevi. Ultimately, we developed a malignant progression model capable of predicting patient prognosis and malignant progression status using bulk RNA sequencing (RNA-seq) data. Our study provides a high-resolution atlas of the malignant transformation of melanoma from nevi and highlights potential targets for further investigation.
样品范围 Single cell
发布日期 2024-12-17
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) No.82073020
National Key R&D Programmes (NKPs) of China No.2022YFC3601800
The Fundamental Research Funds for the Central Universities No.2023CDJYGRH-YB05
The Natural Science Foundation of China No.32200523
Science and Technology Innovation Key R&D Program of Chongqing No.CSTB2023TIAD-STX0011
Chongqing Wanzhou Municipal Science and Health Joint Medical Research Project Key Program No.wzstc-kw2023001
Chongqing Wanzhou Municipal Science and Health Joint Medical Research Project Key Program No.wzstc-kw2023004
Chongqing Wanzhou Municipal Science and Health Joint Medical Research Project Key Program No.wzstc-kw20230402
Chongqing Natural Science Foundation No.CSTB2023NSCQ-MSX0658
Chongqing Natural Science Foundation No.CSTB2023NSCQ-BHX0047
Chongqing Municipal Science and Health Joint Medical Research Project TCM Project No.2024ZYQN001
项目相关网站链接
项目相关网站链接 网站信息描述
https://github.com/BioinformaticsXin/MelMal.Detector MelMal.Detector
提交者 Mingzhu Yin (yinmingzhu2008@126.com)
提交单位 Chongqing University Three Gorges Hospital
提交日期 2024-09-25

项目包含数据信息

资源名称 描述
BioSample (7)  show -