| 项目编号 | PRJCA030666 | ||||||||
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| 项目标题 | DeepPlant: an Accurate Cross-Species Plant 5mC Methylation detection tool of Oxford Nanopore Sequencing | ||||||||
| 涉及领域 | Model organism | ||||||||
| 数据类型 |
Whole genome sequencing
Epigenomics Genome sequencing and assembly |
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| 物种名称 |
Salvia miltiorrhiza
Citrus sinensis Solanum tuberosum Solanum lycopersicum Marchantia polymorpha Physcomitrium patens Glycine max Vitis vinifera Ricinus communis |
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| 描述信息 | In this study, we developed deep neural networks and trained a nanopore-based CHH, CHG, and CpG methylation calling model called DeepPlant. In this project, we have generated and analyzed the Nanopore Sequencing datasets and Next Generation Sequencing datasets for the Salvia miltiorrhiza, Solanum tuberosum, Ricinus communis, Citrus sinensis, and Vitis vinifera. | ||||||||
| 样品范围 | Multispecies | ||||||||
| 发布日期 | 2025-02-08 | ||||||||
| 项目资金来源 |
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| 提交者 | Chuanle Xiao (xiaochuanle@126.com) | ||||||||
| 提交单位 | Zhongshan Ophthalmic Center,Sun Yat-sen University | ||||||||
| 提交日期 | 2024-09-28 |