项目编号 PRJCA037665
项目标题 Telomere-to-Telomere genome assembly of an endangered tree Berchemiella wilsonii (Rhamnaceae)
涉及领域 Evolution
数据类型 Whole genome sequencing
物种名称 Berchemiella wilsonii
描述信息 Berchemiella wilsonii (Schneid.) Nakai is one of the National Key Protected Wild Plants in China, and one of the 120 Plant Species with Extremely Small Populations in China. By combining PacBio HiFi sequencing, DNBSEQ sequencing and Hi-C sequencing, we have assembled a chromosome-scale, haplotype-resolved genome for B. wilsonii. The final assembled haplotype A and haplotype B genomes were 216.84 Mb and 217.69 Mb, anchored to 2n=24 chromosomes, all chromosomal ends contain telomeric characteristic motifs (TTTAGGG), only haplotype A has one gap, both close to a T2T genome assembly, with contig N50 lengths of 18.24 Mb and 18.03 Mb, respectively. Further, BUSCO analysis showed an extremely high assembly completeness (98.9% complete BUSCO genes). The genome contains a total of 22,828 coding genes, of which 21,992 (96.34%) were functionally annotated. This is the first report of the genome of B. wilsonii and the high-quality genome will provide valuable genomic resource for endangered plant species conservation
样品范围 Multiisolate
发布日期 2025-09-19
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
Central Forestry grassland ecological protection and restoration fund National key wildlife protection subsidy project YCZ1960-202301-02F
提交者 jianghao pang (pangjianghao23@mails.ucas.ac.cn)
提交单位 Wuhan Botanical Garden, Chinese Academy of Sciences
提交日期 2025-03-24

项目包含数据信息

资源名称 描述
BioSample (1) -
SAMC4889365 Genome sequencing of Berchemiella wilsonii
GSA (1) -
CRA024114 Telomere-to-Telomere genome assembly of an endangered tree Berchemiella wilsonii (Rhamnaceae)