Accession PRJEB53055
Title Genomic surveillance of Monkeypox virus in Portugal
Data types Other
Sample scope Monoisolate
Description Whole-genome sequencing data of Monkeypox virus collected in Portugal on behalf of the National Institute of Health Dr. Ricardo Jorge (INSA), Lisbon, Portugal. Published read datasets correspond to quality-processed reads (i.e., using Trimmomatic for Illumina or NanoFilt for MinION reads) mapped to the Monkeypox virus reference genome #MT903344.1 using the INSaFLU integrated web-suite pipeline (https://insaflu.insa.pt/).
Publication
PubMed ID Article title Journal name DOI Year
35750157 Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus. Nature medicine 2022
36131032 Addendum: Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus. Nature medicine 2022
37696933 Viral genetic clustering and transmission dynamics of the 2022 mpox outbreak in Portugal. Nature medicine 2023
Organization NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE
Data Source NCBI

Project Data

Resource name Description
Experiment (681)  show -