| Accession |
SAMC088519 |
| Sample name |
BW3 |
| Title |
BW3 |
| Sample type |
Environmental/Metagenome Genomic Sequences MIMS.me -- soil |
| Organism |
soil metagenome |
| Description |
DNA was extracted from the rhizosphere soil of healthy potato samples using CTAB method and 16S rRNA gene was amplified using primers 515F and 806R. The amplified sequences were sequenced using Illumina MiSeq. |
| Attributes |
| Collection date | 2017-09-20 |
|---|
| environment biome | soil |
|---|
| environment feature | rhizosphere |
|---|
| environment material | rhizosphere soil |
|---|
| Geographic location | China: Huizhou, Huidong |
|---|
| Latitude and longitude | 22.86 N 114.93 E |
|---|
| depth | 0.1 m |
|---|
| elevation | 11.03 m |
|---|
| agrochemical additions | |
|---|
| aluminium saturation | |
|---|
| aluminium saturation method | |
|---|
| altitude | |
|---|
| annual and seasonal precipitation | |
|---|
| annual and seasonal temperature | |
|---|
| crop rotation | |
|---|
| current land use | |
|---|
| current vegetation | |
|---|
| current vegetation method | |
|---|
| drainage classification | well |
|---|
| extreme event | |
|---|
| extreme salinity | |
|---|
| FAO classification | |
|---|
| fire | |
|---|
| flooding | |
|---|
| heavy metals | |
|---|
| heavy metals method | |
|---|
| horizon | |
|---|
| horizon method | |
|---|
| links to additional analysis | |
|---|
| link to classification information | |
|---|
| link to climate information | |
|---|
| local classification | |
|---|
| local classification method | |
|---|
| microbial biomass | |
|---|
| microbial biomass method | |
|---|
| miscellaneous parameter | |
|---|
| pH | |
|---|
| pH method | |
|---|
| pooling of DNA extracts | |
|---|
| previous land use | |
|---|
| previous land use method | |
|---|
| profile position | |
|---|
| salinity method | |
|---|
| sieving | |
|---|
| slope aspect | |
|---|
| soil type | |
|---|
| slope gradient | |
|---|
| soil type method | |
|---|
| storage conditions | |
|---|
| texture | |
|---|
| texture method | |
|---|
| tillage | |
|---|
| total N method | |
|---|
| total nitrogen | |
|---|
| total organic carbon method | |
|---|
| total organic carbon | |
|---|
| water content of soil | |
|---|
| water content of soil method | |
|---|
| sample volume or weight for DNA extraction | |
|---|
| Reference for biomaterial | |
|---|
| Relationship to oxygen | |
|---|
| Sample collection device or method | |
|---|
| Sample material processing | |
|---|
| Sample size | |
|---|
| source material identifiers | |
|---|
| Isolation source | |
|---|
| Custom Attributes | |
|---|
|
| Release date |
2019-08-05 |
| BioProject Accession |
PRJCA001605 |
| Submitter |
Jiajia Ni (nijiajia2005@126.com)
|
| Organization |
Southern Medical University |
| Submission date |
2019-08-05 |
