Accession SAMC2336544
Accession in Other Database GSA-Human: HRS452324
Sample name wt_cortical_organoid
Title wt_cortical_organoid
Sample type Human sample
Organism Homo sapiens
Description Cortical organoids derived from wild-type H1 hESCs
Attributes
Isolate not collected
Age
Biomaterial provider Yao Hongjie
Sex male
Tissue cortical neuron
Disease
Cell line
Cell subtype
Cell type
Culture collection
Development stage
Disease stage
Ethnicity
Health State
Karyotype
Phenotype
Population
Race
Type
Treatment
Collection date 2022-08-30
Custom attributes
Release date 2024-05-08
BioProject Accession PRJCA012096
Submitter Hongjie  Yao  (yao_hongjie@gibh.ac.cn)
Organization Guangzhou Institutes of Biomedicine and Health,Chinese Academy of Sciences
Submission date 2023-06-18

Sample Data

Resource name Description
GSA-Human (1) -
HRA003128  (Open Access) CCCTC-binding factor (CTCF) mutations cause intellectual impairment, developmental retardation, short stature, and mild cardiac malformations. However, the mechanism is still unknown. In this study, we constructed a mouse disease model harboring a clinically relevant CTCF missense mutation (R567W) and systematically analyzed the changes in transcriptome, CTCF binding and higher-order structure in several tissues by doing RNA-seq, snRNA-seq, ChIP-seq, BL-Hi-C experiments. Our data indicated that the homozygous CTCFR567W mutated mouse showed growth retardation, deficits in neural and cardiopulmonary development and lethality at birth. Mechanically, the CTCFR567W mutation globally weakened chromatin binding of CTCF, resulted in a rearrangement of the 3D genome structure and abnormal expression of cell-type specific genes. Together, We conclude that CTCF R567 plays a vital role in regulating normal development.
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Samples (2)