| Accession |
SAMC299944 |
| Sample name |
scv-27.fasta |
| Title |
PAK/KHI/JRCGR_SCV-27/2020 |
| Sample type |
Clinical or host-associated pathogen |
| Organism |
Severe acute respiratory syndrome coronavirus 2 |
| Description |
whole genome sequencing and analysis of SARS-CoV-2 isolated from COVID-19 patients in Karachi, Pakistan |
| Attributes |
|
Isolate
|
SARS-CoV-2/human/PAK/JRCGR-KHI27/2020
|
|
Strain
|
|
|
Collected by
|
NIV, PCMD
|
|
Collection date
|
2020-06-02
|
|
Geographic location
|
Pakistan: Karachi
|
|
Host
|
Homo sapiens
|
|
Host disease
|
COVID-19
|
|
Isolation source
|
Nasopharyngeal swab
|
|
Latitude and longitude
|
24.8607 N 67.0011 E
|
|
Culture collection
|
|
|
genotype
|
|
|
Host age
|
|
|
Host description
|
|
|
Host disease stage
|
|
|
Host health state
|
|
|
Host sex
|
not applicable
|
|
Host subject id
|
|
|
Host tissue sampled
|
|
|
Passage history
|
|
|
Pathotype
|
|
|
Serotype
|
|
|
Serovar
|
|
|
Specimen voucher
|
|
|
Subgroup
|
|
|
Subtype
|
|
|
| Release date |
2020-12-25 |
| BioProject Accession |
PRJCA004109 |
| Submitter |
Muhammad Shakeel (mshakeel_211@yahoo.com)
|
| Organization |
Dr. Panjwani Center for Molecular Medicine and Drug Research, ICCBS |
| Submission date |
2020-12-25 |
