Accession |
SAMC299953 |
Sample name |
scv-09.fasta |
Title |
PAK/KHI/JRCGR_SCV-09/2020 |
Sample type |
Clinical or host-associated pathogen |
Organism |
Severe acute respiratory syndrome coronavirus 2 |
Description |
whole genome sequencing and analysis of SARS-CoV-2 isolated from COVID-19 patients in Karachi, Pakistan |
Attributes |
Isolate
|
SARS-CoV-2/human/PAK/JRCGR-KHI09/2020
|
Strain
|
|
Collected by
|
NIV, PCMD
|
Collection date
|
2020-06-14
|
Geographic location
|
Pakistan: Karachi
|
Host
|
Homo sapiens
|
Host disease
|
COVID-19
|
Isolation source
|
Nasopharyngeal swab
|
Latitude and longitude
|
24.8607 N 67.0011 E
|
Culture collection
|
|
genotype
|
|
Host age
|
|
Host description
|
|
Host disease stage
|
|
Host health state
|
|
Host sex
|
not applicable
|
Host subject id
|
|
Host tissue sampled
|
|
Passage history
|
|
Pathotype
|
|
Serotype
|
|
Serovar
|
|
Specimen voucher
|
|
Subgroup
|
|
Subtype
|
|
|
Release date |
2020-12-25 |
BioProject Accession |
PRJCA004109 |
Submitter |
Muhammad Shakeel (mshakeel_211@yahoo.com)
|
Organization |
Dr. Panjwani Center for Molecular Medicine and Drug Research, ICCBS |
Submission date |
2020-12-25 |