| Accession |
SAMC3168579 |
| Sample name |
RJ21_D |
| Title |
RJ21_D |
| Sample type |
Environmental/Metagenome Genomic Sequences MIMS.me -- human-gut |
| Organism |
human feces metagenome |
| Description |
The KneadData tool was first used to remove contaminants from raw FASTQ files. Trimmomatic (v0.39) was used to remove low quality reads (SLIDINGWINDOW:4:20 MINLEN:50 LEADING:3 TRAILING:3). |
| Attributes |
| Collection date | 2023-06-15 |
|---|
| environment biome | digestive tract environment |
|---|
| environment feature | digestive tract environment |
|---|
| environment material | fecal material |
|---|
| Geographic location | China |
|---|
| Latitude and longitude | 30.45 N 116.18 E |
|---|
| Host | Homo sapiens |
|---|
| Reference for biomaterial | |
|---|
| Relationship to oxygen | |
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| Sample collection device or method | |
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| Sample material processing | |
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| Sample size | |
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| source material identifiers | |
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| chemical administration | |
|---|
| Ethnicity | |
|---|
| gastrointestinal tract disorder | |
|---|
| host age | |
|---|
| host body product | |
|---|
| host body temperature | |
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| host diet | |
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| host disease | |
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| host family relationship | |
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| host genotype | |
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| host height | |
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| host last meal | |
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| host occupation | |
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| host phenotype | |
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| host pulse | |
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| host sex | |
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| host subject id | |
|---|
| host tissue sampled | |
|---|
| host total mass | |
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| medication code | |
|---|
| liver disorder | |
|---|
| medical history performed | |
|---|
| miscellaneous parameter | |
|---|
| organism count | |
|---|
| oxygenation status of sample | |
|---|
| perturbation | |
|---|
| sample salinity | |
|---|
| sample storage duration | |
|---|
| sample storage location | |
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| sample storage temperature | |
|---|
| special diet | |
|---|
| temperature | |
|---|
| Isolation source | |
|---|
| Custom Attributes | |
|---|
|
| Release date |
2023-11-13 |
| BioProject Accession |
PRJCA020251 |
| Submitter |
Jie Hong (jiehong97@sjtu.edu.cn)
|
| Organization |
Shanghaijiaotong university |
| Submission date |
2023-11-13 |
