Accession |
SAMC496151 |
Sample name |
CERI-KRISP-K032249 |
Title |
CERI-KRISP-K032249- NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa |
Sample type |
Clinical or host-associated pathogen |
Organism |
Severe acute respiratory syndrome coronavirus 2 |
Description |
SAMN23469688 |
Attributes |
Isolate
|
CERI-KRISP-K032249
|
Strain
|
SARS-CoV-2
|
Collected by
|
National Health Laboratory Service
|
Collection date
|
2021-11-22
|
Geographic location
|
South Africa: Gauteng
|
Host
|
Homo sapiens
|
Host disease
|
COVID-19
|
Isolation source
|
Oropharyngeal swab
|
Latitude and longitude
|
26.01S 28.12E
|
Culture collection
|
|
genotype
|
|
Host age
|
|
Host description
|
|
Host disease stage
|
|
Host health state
|
|
Host sex
|
not applicable
|
Host subject id
|
|
Host tissue sampled
|
|
Passage history
|
|
Pathotype
|
|
Serotype
|
|
Serovar
|
|
Specimen voucher
|
|
Subgroup
|
|
Subtype
|
|
|
Release date |
2021-12-01 |
BioProject Accession |
PRJCA007411 |
Submitter |
GSA GSA (gsa-submit@big.ac.cn)
|
Organization |
KwaZulu-Natal Research Innovation and Sequencing Platform-UKZN |
Submission date |
2021-12-01 |