| Accession |
SAMC496201 |
| Sample name |
CERI-KRISP-K032338 |
| Title |
CERI-KRISP-K032338- NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa |
| Sample type |
Clinical or host-associated pathogen |
| Organism |
Severe acute respiratory syndrome coronavirus 2 |
| Description |
SAMN23469738 |
| Attributes |
|
Isolate
|
CERI-KRISP-K032338
|
|
Strain
|
SARS-CoV-2
|
|
Collected by
|
National Health Laboratory Service
|
|
Collection date
|
2021-11-16
|
|
Geographic location
|
South Africa: Gauteng
|
|
Host
|
Homo sapiens
|
|
Host disease
|
COVID-19
|
|
Isolation source
|
Oropharyngeal swab
|
|
Latitude and longitude
|
26.01S 28.12E
|
|
Culture collection
|
|
|
genotype
|
|
|
Host age
|
|
|
Host description
|
|
|
Host disease stage
|
|
|
Host health state
|
|
|
Host sex
|
not applicable
|
|
Host subject id
|
|
|
Host tissue sampled
|
|
|
Passage history
|
|
|
Pathotype
|
|
|
Serotype
|
|
|
Serovar
|
|
|
Specimen voucher
|
|
|
Subgroup
|
|
|
Subtype
|
|
|
| Release date |
2021-12-01 |
| BioProject Accession |
PRJCA007411 |
| Submitter |
GSA GSA (gsa-submit@big.ac.cn)
|
| Organization |
KwaZulu-Natal Research Innovation and Sequencing Platform-UKZN |
| Submission date |
2021-12-01 |
