| Accession |
SAMN30012716 |
| Title |
CDC Sars CoV2 Sequencing Baseline Constellation |
| Organism |
Severe acute respiratory syndrome coronavirus 2 |
| Sample type |
SARS-CoV-2: clinical or host-associated; version 1.0 |
| Attributes |
|
host_disease
|
COVID-19
|
|
collection_date
|
2022-07-14
|
|
diagnostic_pcr_Ct_value_1
|
23.143
|
|
diagnostic_pcr_Ct_value_2
|
20.668
|
|
diagnostic_pcr_Ct_value_3
|
33.771
|
|
collection_device
|
Nasal Swabs
|
|
collected_by
|
Laboratory Corporation of America
|
|
purpose_of_sequencing
|
baseline surveillance (random sampling)
|
|
diagnostic_gene_name_2
|
N2 gene
|
|
diagnostic_gene_name_3
|
RP gene
|
|
diagnostic_pcr_protocol_3
|
Labcorp LDT
|
|
host_age
|
13
|
|
diagnostic_gene_name_1
|
N1 gene
|
|
host_sex
|
female
|
|
host_race
|
Unknown
|
|
lineage/clade name
|
BA.5.6
|
|
diagnostic_pcr_protocol_1
|
Labcorp LDT
|
|
diagnostic_pcr_protocol_2
|
Labcorp LDT
|
|
host
|
Homo sapiens
|
|
collection_method
|
Nasal Swabs
|
|
Isolate
|
SARS-CoV-2/Human/USA/NJ-CDC-LC0781094/2022
|
|
geo_loc_name
|
USA: New Jersey
|
|
isolation_source
|
Nasal Swabs
|
|
| Organization |
CDC-OAMD
|
| Release date |
2022-07-28 |
| Data Source |
NCBI |
