|
host_disease
|
COVID-19
|
|
collection_date
|
2022-09-06
|
|
diagnostic_pcr_Ct_value_1
|
Unknown
|
|
diagnostic_pcr_Ct_value_2
|
Unknown
|
|
diagnostic_pcr_Ct_value_3
|
Unknown
|
|
collection_device
|
Nasal swab
|
|
collected_by
|
'Helix'
|
|
purpose_of_sequencing
|
baseline surveillance (random sampling)
|
|
diagnostic_gene_name_2
|
ORF1ab
|
|
diagnostic_gene_name_3
|
S
|
|
diagnostic_pcr_protocol_3
|
Helix COVID-19 and Flu Test
|
|
host_age
|
66
|
|
diagnostic_gene_name_1
|
N
|
|
host_sex
|
female
|
|
host_race
|
Black or African American
|
|
lineage/clade name
|
BA.5.5
|
|
diagnostic_pcr_protocol_1
|
Helix COVID-19 and Flu Test
|
|
diagnostic_pcr_protocol_2
|
Helix COVID-19 and Flu Test
|
|
host
|
Homo sapiens
|
|
collection_method
|
Nasal swab
|
|
Isolate
|
SARS-CoV-2/Human/USA/AL-CDC-STM-MDZAZ635X/2022
|
|
geo_loc_name
|
USA: Alabama
|
|
isolation_source
|
nasal swab
|
