gene number TP53 87 PIK3CA 31 GATA3 17 CDH1 13 KMT2C 13 ESR1 10 PTEN 9 PREX2 8 BRCA2 7 ERBB4 7 NF1 7 TGFBR2 7 APC 6 ARID1A 6 ATM 6 BRCA1 6 EGFR 6 GRIN2A 6 KMT2D 6 MED12 6 NOTCH2 6 NOTCH3 6 PIK3R1 6 RB1 6 ROS1 6 SETD2 6 SPEN 6 TBX3 6 ERBB2 5 MAP2K4 5 NSD1 5 POLE 5 RBM10 5 ATR 4 BCOR 4 CDKN1B 4 CREBBP 4 DNMT3A 4 ERBB3 4 EZH2 4 FAT1 4 FGF4 4 FLT1 4 JAK1 4 MTOR 4 AMER1 3 ARID2 3 ATRX 3 BRAF 3 BRIP1 3 CSF1R 3 CYLD 3 DIS3 3 DOT1L 3 EXT1 3 FLT4 3 FOXP1 3 IKZF1 3 IRS2 3 KDM5A 3 MAP3K1 3 NBN 3 NOTCH1 3 NTRK2 3 PDGFRA 3 PLCG2 3 RUNX1 3 SMAD4 3 TSC2 3 WHSC1L1 3 AKT2 2 ARID1B 2 ASPM 2 AXL 2 BAP1 2 BARD1 2 CARD11 2 CASP8 2 CBFB 2 CD79A 2 CDC73 2 CDKN2A 2 CIC 2 CTNNB1 2 CUL3 2 CXCR4 2 EP300 2 EPHA3 2 FANCC 2 FGF3 2 FGFR2 2 GNA13 2 GNAS 2 GSK3B 2 IGF1R 2 IKBKE 2 JAK2 2 JAK3 2 KCNB2 2 KDM5C 2 KDR 2 KEAP1 2 KIT 2 KMT2A 2 KRAS 2 MKI67 2 MLH1 2 MUTYH 2 MYC 2 MYCN 2 NCAM2 2 NFE2L2 2 NRAS 2 PALB2 2 PARK2 2 PIK3CG 2 PTCH1 2 PTPN1 2 RAD51 2 RAD51C 2 SMARCB1 2 SMO 2 SOX2 2 TNFAIP3 2 TPH2 2 TSC1 2 VEGFA 2 VHL 2 WT1 2 ABCB1 1 ABL1 1 ABL2 1 ACVR1B 1 AKAP9 1 AKT1 1 AKT3 1 ALDOC 1 AR 1 ARAF 1 ARID5B 1 ASXL1 1 ATAD5 1 BAK1 1 BCL2L2 1 BLM 1 BRD4 1 BTG1 1 CA9 1 CAMK2A 1 CANT1 1 CAST 1 CCNB1 1 CCND2 1 CCNE1 1 CD180 1 CD1D 1 CD28 1 CD3EAP 1 CD47 1 CDH19 1 CDH8 1 CDK10 1 CHEK2 1 CPA4 1 CSDE1 1 CTCF 1 CYP2A6 1 CYP2C19 1 CYP2C8 1 CYP2E1 1 DICER1 1 DPYD 1 E2F1 1 EGF 1 EPHA5 1 EPHA7 1 ERCC6 1 ERRFI1 1 ETV6 1 FANCG 1 FASN 1 FBXO11 1 FGF14 1 FGFR1 1 FH 1 FKBP4 1 FLT3 1 FOXA1 1 GALNS 1 GAPDH 1 GLI1 1 GNAQ 1 GPC3 1 GRM8 1 HERPUD1 1 HGF 1 HIST1H3B 1 HIST1H3F 1 HIST1H3J 1 HNF1A 1 HNF1B 1 IDH1 1 IL7R 1 INPP4B 1 ITCH 1 KLC1 1 KLF6 1 LDHAL6A 1 LDHAL6B 1 LDHC 1 LIMD1 1 LRP5 1 LRRC4C 1 MAP2K1 1 MAX 1 MCL1 1 MEN1 1 MET 1 MITF 1 MSH3 1 MTAP 1 MYD88 1 NCOA1 1 NFKBIA 1 NPFF 1 NTRK1 1 NUP93 1 PAX5 1 PDE4B 1 PDGFRB 1 PDK1 1 PDK3 1 PDP2 1 PFKFB3 1 PGK1 1 PIGF 1 PIK3CB 1 PIK3R2 1 PMS1 1 PMS2 1 POFUT2 1 POLB 1 PRKAR1A 1 PTPRB 1 RAD50 1 RALB 1 RARA 1 RET 1 RICTOR 1 RPTOR 1 RYR2 1 SDC4 1 SF3B1 1 SFRP1 1 SFRP2 1 SLC34A2 1 SMAD3 1 SMARCA1 1 SMARCA4 1 SOCS1 1 SOX1 1 STAG2 1 SYK 1 SYNE2 1 TBC1D20 1 TCN1 1 TEK 1 TERT 1 TNFRSF11A 1 TSHR 1 UBA1 1 UBR3 1 WARS 1 XPC 1 XPO1 1 ZNF521 1 ZRSR2 1