Database Commons

a catalog of biological databases

e.g., animal; RNA; Methylation; China

Database Profile

General information

URL: https://snengs.nichd.nih.gov
Full name: A multi-species multi-timepoint transcriptome database and webpage for the pineal gland and retina
Description: SNE-NICHD provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens). Studies cover day and night conditions. The data in the database have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser.
Year founded: 2020
Last update:
Version:
Accessibility:
Manual:
Accessible
Real time : Checking...
Country/Region: United States
Data type:
RNA
Data object:
Database category:
Major organism:
Keywords:

Contact information

University/Institution: National Institute of Child Health and Human Development, National Institutes of Health
Address: Section on Neuroendocrinology, Program in Developmental Endocrinology and Genetics, Eunice Shriver Kennedy National Institute of Child Health and Human Development, National Institutes of Health, Bethesda MD, USA
City: Bethesda
Province/State: Maryland
Country/Region: United States
Contact name (PI/Team): David C. Klein
Contact email (PI/Helpdesk): kleind@mail.nih.gov

Publications

32533862
Resource: A multi-species multi-timepoint transcriptome database and webpage for the pineal gland and retina. [PMID: 32533862]
Eric Chang, Cong Fu, Steven L Coon, Shahar Alon, Marjan Bozinoski, Matthew Breymaier, Diego M Bustos, Samuel J Clokie, Yoav Gothilf, Caroline Esnault, P Michael Iuvone, Christopher E Mason, Margaret J Ochocinska, Adi Tovin, Charles Wang, Pinxian Xu, Jinhang Zhu, Ryan Dale, David C Klein

The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research.

J. Pineal Res.. 2020:69(3) | 1 Citations (from Europe PMC, 2021-06-19)

Ranking

All databases:
3812/5061 (24.699%)
Expression:
724/924 (21.753%)
3812
Total Rank
1
Citations
1
z-index

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Record metadata

Created on: 2020-11-11
Curated by:
lin liu [2021-02-19]
Zhao Li [2020-11-23]
Ming Chen [2020-11-11]