| URL: | http://3dgd.biosino.org |
| Full name: | 3D Genome Database |
| Description: | 3DGD (3D Genome Database), is a database that currently collected Hi-C data on four species, for easy accessing and visualization of chromatin 3D structure data. |
| Year founded: | 2014 |
| Last update: | 2013-11-17 |
| Version: | v1.1 |
| Accessibility: |
Unaccessible
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| Country/Region: | China |
| Data type: | |
| Data object: | |
| Database category: | |
| Major species: | |
| Keywords: |
| University/Institution: | Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences |
| Address: | 320 Yue Yang Road, Shanghai 200031, P. R. China |
| City: | Shanghai |
| Province/State: | Shanghai |
| Country/Region: | China |
| Contact name (PI/Team): | Yixue Li |
| Contact email (PI/Helpdesk): | yxli@sibs.ac.cn |
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The 3DGD: a database of genome 3D structure. [PMID: 24526713]
The studies of chromatin 3D structure help us to understand its formation and function. Techniques combining chromosome conformation capture and next generation sequencing can capture chromatin structure information and has been applied to several different species and cell lines. We built 3DGD (3D Genome Database), a database that currently collected Hi-C data on four species, for easy accessing and visualization of chromatin 3D structure data. With the integration of other omics data such as genome-wide protein-DNA-binding data, this data source would be useful for researchers interested in chromatin structure and its biological functions. The 3DGD v1.1, data browser, downloadable files and documentation are available at: http://3dgd.biosino.org/. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com. |