Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PIGD

General information

URL: http://pigd.ahau.edu.cn/
Full name: Poaceae Intronless Genes Database
Description: PIGD (Poaceae Intronless Genes Database) is a collection of intronless genes that integrates data from Phytozome, Pfam, ExPASy, NCBI, ProtFun and WoLF PSORT.
Year founded: 2014
Last update: 2014-10-01
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Anhui Agricultural University
Address: Hefei 230036, China
City: Hefei
Province/State: Anhui
Country/Region: China
Contact name (PI/Team): Beijiu Cheng
Contact email (PI/Helpdesk): bjchengahau@163.com

Publications

25270086
PIGD: a database for intronless genes in the Poaceae. [PMID: 25270086]
Yan H, Jiang C, Li X, Sheng L, Dong Q, Peng X, Li Q, Zhao Y, Jiang H, Cheng B.

Intronless genes are a feature of prokaryotes; however, they are widespread and unequally distributed among eukaryotes and represent an important resource to study the evolution of gene architecture. Although many databases on exons and introns exist, there is currently no cohesive database that collects intronless genes in plants into a single database. In this study, we present the Poaceae Intronless Genes Database (PIGD), a user-friendly web interface to explore information on intronless genes from different plants. Five Poaceae species, Sorghum bicolor, Zea mays, Setaria italica, Panicum virgatum and Brachypodium distachyon, are included in the current release of PIGD. Gene annotations and sequence data were collected and integrated from different databases. The primary focus of this study was to provide gene descriptions and gene product records. In addition, functional annotations, subcellular localization prediction and taxonomic distribution are reported. PIGD allows users to readily browse, search and download data. BLAST and comparative analyses are also provided through this online database, which is available at http://pigd.ahau.edu.cn/. PIGD provides a solid platform for the collection, integration and analysis of intronless genes in the Poaceae. As such, this database will be useful for subsequent bio-computational analysis in comparative genomics and evolutionary studies.

BMC Genomics. 2014:15() | 19 Citations (from Europe PMC, 2026-06-06)

Ranking

All databases:
4393/6932 (36.642%)
Gene genome and annotation:
1329/2040 (34.902%)
4393
Total Rank
18
Citations
1.5
z-index

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Record metadata

Created on: 2015-06-30
Curated by:
Lina Ma [2018-07-04]
Shixiang Sun [2016-03-25]
Shixiang Sun [2015-11-21]