Manuals

We provide here several user manuals and quick guides. All the quick guides are from the EMBnet, You may print out them as references.

UNIX Commands

• 10 daily used UNIX commands [PDF]
• 10 special UNIX commands [PDF]
• 10 useful UNIX commands [PDF]

PubMed Query

• PubMed tags [PDF]
• PubMed MeSH terms for bioinformatics [PDF]

PyMol Reference

• PyMol command reference [PDF]

EMBOSS Commands

• Sequence manipulation [PDF]
• Protein sequence analysis [PDF]
• DNA sequence analysis [PDF]
• Sequence alignment [PDF]

WebLab Help

• WebLab user guide [PDF]

Molecular Modeling

• Swiss PDBViewer [PDF]

EMBnet quick guides

• UNIX [PDF]
• EMBOSS [PDF]
• ExPASy [PDF]
• SwissProt [PDF]
• BLAST [PDF]
• Phylip [PDF]
• SwissModel [PDF]

Scoring Matrix

• BLOSUM62 scoring matrix [PDF] adapted from NCBI FTP
• PAM250 scoring matrix [PDF] NCBI FTP
• DNAFull scoring matrix

Database format

• EMBL/GenBank Division [PDF]
• EMBL/GenBank Format [PDF]
• EMBL/GenBank Feature Table [PDF]
• Swiss-Prot potein names [PDF]

All the PDF file of the above manuals can be downloaded freely for teaching. The copyright belongs to the original authors.