Dataset - GEND000009 - Gene Expression Nebulas

基于标准化流程分析的转录图谱综合数据库

多物种转录图谱整合数据库

GEND000009: RNA sequencing of human bronchial epithelial cell transcriptomes after repopulation and differentiation on bronchial scaffolds from COPD patients and healthy donors

项目编号: PRJNA422059 原始系列编号: GSE107971 样本数: 36

测序方法:	Bulk RNA-seq
物种:	Homo sapiens
组织:	Bronchus
健康状况:	Chronic Obstructive Pulmonary Disease (COPD) Normal
细胞类型:	Primary Human Bronchial Epithelial Cell
发育阶段:	Differentiation was induced 4 days later and repopulated scaffolds were collected after 0 days of differentiation. Differentiation was induced 4 days later and repopulated scaffolds were collected after 14 days of differentiation. Differentiation was induced 4 days later and repopulated scaffolds were collected after 21 days of differentiation. Differentiation was induced 4 days later and repopulated scaffolds were collected after 28 days of differentiation. Differentiation was induced 4 days later and repopulated scaffolds were collected after 35 days of differentiation. Differentiation was induced 4 days later and repopulated scaffolds were collected after 7 days of differentiation.
生物学场景:	基准参考: No 遗传: - 表型: Disease 环境: - 空间: Cell type 时间: Time series
质量和数量:	RNA类型: poly(A)+ RNA 比对率中位数: 0.9976 覆盖度中位数: 0.24 最大测序读段长度: 75 最大重复数: 3
元数据下载:
AI可用语料数据下载:

基因表达模式

或

转录图谱

Note:

GENDX:

基因表达图谱

GENDE:

RNA编辑图谱

GENDS:

可变剪接图谱

GENDC:

环形RNA表达图谱

ID: GENDX000009 下载

参考基因组: GRCh38 v99

基因组注释: GRCh38 v99

数据处理:

Read filtering: Fastp v0.20.0
Strandness of RNA-seq library: RseQC v2.6.4
Read mapping: STAR v2.7.1a

样本

	GEN样本编号	GEN样本名称	样本编号	样本名称	生物样本编号	样本访问号	实验访问号	释放日期	提交日期	更新日期	物种	种族	族裔	年龄	年龄单位	性别	来源名称	组织	细胞类型	细胞亚型	细胞系	疾病	疾病状态	发育阶段	突变/变异	表型	组别描述	生长方案	处理方案	提取方案	建库方案	分子类型	库的片段类型	链特异性	库的链类型	加标（Spike-In）	测序方法	测序平台	测序仪型号	细胞数	测序片段数	碱基数	平均测序片段长度_1	平均测序片段长度_2	唯一比对率	多重比对率	覆盖度