Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

GEND000052: Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells

BioProject ID:    PRJNA546254     Original Project ID:    GSE132172    

Strategy:
Species:
Healthy Condition:
Cell Type:
Cell Line:
Cell Number:
Biological Context:
Baseline:
No
Genetic:
-
Phenotypic:
Disease
Environmental:
-
Spatial:
Cell line
Temporal:
-
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.99245
Median Coverage:
0.08
Max Sequencing Length:
191
#Max Replicate:
1

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000052 Download
Reference Genome: GRCh38 v99, ERCC
Genome Annotation: GRCh38 v99, ERCC
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: