Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

GEND000194: Single-cell RNA sequencing of lung adenocarcinoma patient-derived cells

BioProject ID:    PRJNA285793     Original Project ID:    GSE69405     Paired Dataset(s):     GEND000195

Strategy:
Species:
Tissue:
Healthy Condition:
Cell Type:
Cell Line:
Biological Context:
Baseline:
No
Genetic:
-
Phenotypic:
Disease
Environmental:
-
Spatial:
Cell type
Temporal:
-
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.965
Median Coverage:
0.44
Max Sequencing Length:
197
#Max Replicate:
1

Gene Expression Patterns

OR
Created with Highcharts 9.1.2Gene Expression Patterns0100200300GENS00018563GENS00018587GENS00018586GENS00018585GENS00018584GENS00018583GENS00018582GENS00018581GENS00018580GENS00018579GENS00018578GENS00018577GENS00018576GENS00018575GENS00018574GENS00018572GENS00018573GENS00018571GENS00018570GENS00018569GENS00018568GENS00018567GENS00018566GENS00018565GENS00018564ENSG00000000003ENSG00000000005ENSG00000000419ENSG00000000457ENSG00000000460ENSG00000000938ENSG00000000971ENSG00000001036ENSG00000001084ENSG00000001167ENSG00000001460ENSG00000001461ENSG00000001497ENSG00000001561ENSG00000001617ENSG00000001626ENSG00000001629ENSG00000001630ENSG00000001631ENSG00000002016
Created with Highcharts 9.1.2Expression level (TPM)ENSG00000000003ENSG00000000005ENSG00000000419ENSG00000000457ENSG00000000460ENSG00000000938ENSG00000000971ENSG00000001036ENSG00000001084ENSG00000001167ENSG00000001460ENSG00000001461ENSG00000001497ENSG00000001561ENSG00000001617ENSG00000001626ENSG00000001629ENSG00000001630ENSG00000001631ENSG00000002016050100150200250300

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000194 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: