Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
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GEND000243
Basic Information Samples Transcriptomic Profiles Visualization

GEND000243: Single-cell RNA-seq of of bone marrow derived mononuclear phagocytes derived from mouse; rat; rabbit or pig

BioProject ID:    PRJEB26923     Original Project ID:    ERA1492878     Paired Dataset(s):     GEND000240 GEND000241 GEND000242

Strategy:
Species:
Rattus norvegicus
Tissue:
Healthy Condition:
Cell Number:
Biological Context:
Baseline:
Yes
Genetic:
-
Phenotypic:
Gender
Environmental:
-
Spatial:
Tissue
Temporal:
-
Quality and Quantity:
RNA Type:
poly(A)+ RNA
Median Mapping Quality:
0.9817
Median Coverage:
7.03
Max Sequencing Length:
95
#Max Replicate:
1

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000243 Download
Reference Genome: Rnor_6.0.101
Genome Annotation: Rnor_6.0.101
Data Processing:
  1. Data generation: Cellranger

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
GEN Sample ID GEN Sample Name Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate