Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

GEND000388: SARS-CoV-2 infection and replication in human gastric organoids

BioProject ID:    PRJNA764429     Original Project ID:    GSE184390    

Strategy:
Species:
Tissue:
Healthy Condition:
Biological Context:
Baseline:
No
Genetic:
-
Phenotypic:
Disease; Infection
Environmental:
Biotic stress
Spatial:
Organoid
Temporal:
-
Quality and Quantity:
RNA Type:
polyA(+) RNA
Median Mapping Quality:
0.98325
Median Coverage:
1.11
Max Sequencing Length:
100
#Max Replicate:
4

Gene Expression Patterns

OR

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000388 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: