Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

GEND000409: Multi-omic data integration allows baseline immune signatures to predict hepatitis B vaccine response in a small cohort

BioProject ID:    PRJNA648957     Original Project ID:    GSE155198    

Strategy:
Species:
Tissue:
Healthy Condition:
Cell Type:
Cell Line:
Development Stage:
Biological Context:
Baseline:
Yes
Genetic:
-
Phenotypic:
-
Environmental:
-
Spatial:
Tissue
Temporal:
Time Series
Quality and Quantity:
RNA Type:
Poly(A)+ RNA
Median Mapping Quality:
0.9977
Median Coverage:
0.30
Max Sequencing Length:
98
#Max Replicate:
15

Gene Expression Patterns

OR

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000409 Download
Reference Genome: GRCh38 v99
Genome Annotation: GRCh38 v99
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Strandness of RNA-seq library: RseQC v2.6.4
  3. Read mapping: STAR v2.7.1a

Samples

Display Columns
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis: