Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
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GEND000641
Basic Information Samples Gene Expression Patterns Transcriptomic Profiles Visualization

GEND000641: Comparative analysis of shoot and root in response to salinity stress in camelina sativa

BioProject ID:    PRJNA397728     Original Project ID:    GSE102422     Sample Number:    12    

Strategy:
Species:
Camelina sativa
Tissue:
Healthy Condition:
Cell Type:
Cell Line:
Development Stage:
Biological Context:
Baseline:
No
Genetic:
-
Phenotypic:
-
Environmental:
Abiotic stress
Spatial:
Tissue
Temporal:
-
Quality and Quantity:
RNA Type:
polyA(+) RNA
Median Mapping Quality:
0.9824
Median Coverage:
9.94
Max Sequencing Length:
121
#Max Replicate:
3
Meta Data Download:

Gene Expression Patterns

OR
Heatmap Boxplot

Transcriptomic Profiles

Note:
GENDX:
Gene Expression Profiles
GENDE:
RNA Editing Profiles
GENDS:
Alternative Splicing Profiles
GENDC:
CircRNA Expression Profiles
ID: GENDX000641 Download
Reference Genome: GCF_000633955.1_Cs
Genome Annotation: GCF_000633955.1_Cs
Data Processing:
  1. Read filtering: Fastp v0.20.0
  2. Read mapping: STAR v2.7.1a
  3. Expression calculation: RSEM v1.3.1

Samples

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Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
(0)
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GEN Sample ID GEN Sample Name Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Condition Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate