Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

PRJCA001246: Transcriptomic comparison between doule-low and double-high Brassica napus cultivars

Source: NGDC / CRA001407
Submission Date: Jan 25 2019
Release Date: Feb 18 2019
Update Date: -

Summary: Transcriptomic comparison in different organs between doule-low and double-high Brassica napus cultivars

GEN Datasets:
GEND000312
Strategy:
Species:
Tissue:
Protocol
Growth Protocol: -
Treatment Protocol: -
Extract Protocol: Total RNA was extract from leaves with CTAB methods, shear the cDNA to ~350bp with Bioruptor plus, sequence was generate on Illumina Hiseq 4000 sequencer
Library Construction Protocol: -
Sequencing
Molecule Type: -
Library Source:
Library Layout: PAIRED
Library Strand: -
Platform: ILLUMINA
Instrument Model: Illumina HiSeq 4000
Strand-Specific: Unspecific
Samples
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
Data Resource GEN Sample ID GEN Dataset ID Project ID BioProject ID Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate
Publications
Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement.
Nature communications . 2019-03-11 [PMID: 30858362]