Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

PRJCA001878: Arabidopsis wild type and knat3knat7

Source: NGDC / CRA002075
Submission Date: Nov 03 2019
Release Date: Feb 24 2020
Update Date: -

Summary: Wild type and mutant differentially expressed genes

GEN Datasets:
GEND000315
Strategy:
Species:
Tissue:
Protocol
Growth Protocol: Plants were grown on soil with supplemental lighting with a photoperiod of 16 h light-8 h dark and light intensity and temperature of 120 µmol m-2 s-1 and 22 °C, respectively.
Treatment Protocol: -
Extract Protocol: Total RNA extraction and RNA-seq were performed by the Biomarker Technologies Corporation (Beijing, China).
Library Construction Protocol: -
Sequencing
Molecule Type: -
Library Source:
Library Layout: PAIRED
Library Strand: -
Platform: ILLUMINA
Instrument Model: Illumina HiSeq 2500
Strand-Specific: Unspecific
Samples
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
Data Resource GEN Sample ID GEN Dataset ID Project ID BioProject ID Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate
Publications
The class II KNOX transcription factors KNAT3 and KNAT7 synergistically regulate monolignol biosynthesis in Arabidopsis.
Journal of experimental botany . 2020-09-01 [PMID: 32474603]