Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species

PRJCA002030: Pan-Genome of Wild and Cultivated Soybeans

Source: NGDC / CRA002272
Submission Date: Jan 10 2020
Release Date: Apr 08 2020
Update Date: -

Summary: Soybean is one of the most important vegetable oil and protein feed crops. To capture the entire genomic diversity, it is needed to construct a complete high-quality pan-genome from diverse soybean accessions. In this study, we performed individual de novo genome assemblies for 26 representative soybeans that were selected from 2,898 deeply sequenced accessions. Using these assembled genomes together with three previously reported genomes, we constructed a graph-based genome and performed pan-genome analysis, which identified numerous genetic variations that cannot be detected by direct mapping of short sequence reads onto a single reference genome. The structural variations from the 2,898 accessions that were genotyped based on the graph-based genome and the RNA sequencing (RNA-seq) data from the representative 26 accessions helped to link genetic variations to candidate genes that are responsible for important traits. This pan-genome resource will promote evolutionary and functional genomics studies in soybean.

Overall Design: RNA-seq data of 26 soybeans

GEN Datasets:
GEND000303 GEND000304
Strategy:
Species:
Tissue:
Isolation_source:
Development Stage:
Protocol
Growth Protocol: All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2018.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2018.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2019.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2019.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2020.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2020.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2021.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2021.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2022.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2022.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2023.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2023.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2024.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2024.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2025.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2025.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2026.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2026.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2027.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2027.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2028.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2028.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2029.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2029.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2030.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2030.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2031.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2031.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2032.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2032.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2033.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2033.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2034.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2034.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2035.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2035.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2036.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2036.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2037.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2037.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2038.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2038.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2039.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2039.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2040.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2040.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2041.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2041.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2042.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2042.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2043.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2043.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2044.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2044.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2045.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2045.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2046.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2046.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2047.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2047.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2048.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2048.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2049.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2049.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2050.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2050.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2051.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2051.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2052.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2052.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2053.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2053.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2054.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2054.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2055.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2055.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2056.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2056.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2057.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2057.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2058.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2058.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2059.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2059.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2060.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2060.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2061.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2061.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2062.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2062.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2063.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2063.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2064.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2064.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2065.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2065.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2066.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2066.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2067.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2067.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2068.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2068.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2069.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2069.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2070.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2070.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2071.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2071.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2072.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2072.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2073.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2073.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2074.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2074.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2075.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2075.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2076.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2076.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2077.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2077.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2078.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2078.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2079.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2079.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2080.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2080.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2081.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2081.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2082.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2082.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2083.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2083.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2084.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2084.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2085.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2085.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2086.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2086.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2087.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2087.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2088.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2088.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2089.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2089.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2090.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2090.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2091.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2091.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2092.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2092.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2093.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2093.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2094.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2094.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2095.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2095.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2096.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2096.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2097.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2097.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2098.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2098.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2099.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2099.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2100.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2100.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2101.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2101.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2102.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2102.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2103.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2103.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2104.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2104.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2105.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2105.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2106.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2106.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2107.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2107.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2108.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2108.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2109.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2109.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2110.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2110.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2111.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2111.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2112.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2112.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2113.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2113.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2114.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2114.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2115.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2115.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2116.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2116.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2117.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2117.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2118.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2118.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2119.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2119.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2120.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40 ? 22 0 N and 116 ? 23 0 E) in the growth season in 2120.; All soybean accessions were planted at the Experimental Station of the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing (40°22'N and 116°23'E) in the growth season in 2121.
Treatment Protocol: -
Extract Protocol: Total RNA was isolated using the RNAprep Pure Plant Kit (TIANGEN).
Library Construction Protocol: RNA-seq library construction was performed following the method of a previous reference (Shen et al., 2014) and sequenced on the NovaSeq platform.
Sequencing
Molecule Type: poly(A)+ RNA
Library Source:
Library Layout: PAIRED
Library Strand: -
Platform: ILLUMINA
Instrument Model: Illumina NovaSeq 6000
Strand-Specific: Unspecific
Samples
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
Data Resource GEN Sample ID GEN Dataset ID Project ID BioProject ID Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate
Publications
Pan-Genome of Wild and Cultivated Soybeans.
Cell . 2020-06-17 [PMID: 32553274]