概要: Taoyuan of Yunnan in China, has been a well-known amazing place where the highest rice yield in the world was recorded. Since Taoyuan is a unique dry and hot valley of the upstream Yangtze River, we chose Jinghong where is a typical region planting indica rice as the control place.To systematically reveal the gene regulation mechanism underpinning this ultra-high yield,tiller buds, tiller roots, young panicles, booting panicles, booting leaves, booting roots and flag leaves of the rice variety 9311 from Taoyuan and Jinghong were collected for RNA-seq.
Water, weeds, insects, and disease were controlled because their control is needed to avoid yield loss.
处理方案:
-
提取方案:
Total RNA of the tissues was extracted and determined using the NanoDrop ND-2000 system (Thermo Scientific, Waltham, MA), followed by sequencing using an Illumina HiSeq 2500 platform.
建库方案:
-
测序信息
分子类型:
-
库的片段类型:
PAIRED
库的链类型:
-
测序平台:
ILLUMINA
测序仪型号:
Illumina HiSeq 2500
链特异性:
Unspecific
样本
基本信息:
样本描述:
生物条件:
实验变量:
方案:
测序信息:
质量评估:
数据来源
GEN样本编号
GEN数据集编号
系列编号
项目编号
样本编号
样本名称
生物样本编号
样本访问号
实验访问号
释放时间
提交时间
最后更新时间
物种
种族
族裔
年龄
年龄单位
性别
来源名称
组织
细胞类型
细胞亚型
细胞系
疾病
疾病状态
发育阶段
突变/变异
表型
Condition Detail
生长方案
处理方案
提取方案
建库方案
分子类型
库的片段类型
链特异性
库的链类型
加标（Spike-In）
测序方法
测序平台
测序仪型号
细胞数
测序片段数
碱基数
平均测序片段长度_1
平均测序片段长度_2
唯一比对率
多重比对率
覆盖度
文章
Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis.
