Gene Expression Nebulas概要: Conclusions: We successfully established the NCX-NES cell culture as an experimental system for the study of neural stem cells and used it to study ZIKV infection
项目整体设计: Single cell RNA-seq of over 1;000 cells of NCX-NES cell culture and fetal brain. All of the cells in this dataset are non-ZIKV-infected.
| 测序方法: |
|
| 物种: |
|
| 组织: |
|
| 健康状况: |
|
| 生长方案: | Cells were resuspended in DMEM/F12 with addition of B27 supplement (1:1000), N2 supplement (1:100), 20 ng/ml FGF-2, 20 ng/ml EGF, 1.6 g/l glucose, 20 ?g/ml insulin and 5 ng/ml BDNF. 10 ?M rock inhibitor (Y-27632, Stemgent 04-0012) was added to increase cell viability. The cells were then plated into dishes coated with poly-L-ornithine (0.01%, Sigma P4957), laminin (5 ?g/ml, Invitrogen 23017-015) and fibronectin (1μg/ml, Corning, 354008,). Medium was changed 12 hr after plating and the cells were passaged using 0.25% trypsin within 3 d and replated to obtain a monolayer of cells at a density of 4–5 × 104 cells/cm2. Half of the media was changed every 2–3 d to allow culture conditioning." |
| 处理方案: | - |
| 提取方案: | RNA was extracted after single cell capture using C1 single cell auto prep system, with manufacturer protocol. |
| 建库方案: | RNA libraries were prepared for sequencing using with Illumina NEXTERA XT kit |
| 分子类型: | poly(A)+ RNA |
| 库的片段类型: | SINGLE |
| 库的链类型: | - |
| 测序平台: | ILLUMINA |
| 测序仪型号: | Illumina HiSeq 2000 |
| 链特异性: | Unspecific |
| 数据来源 | GEN样本编号 | GEN数据集编号 | 系列编号 | 项目编号 | 样本编号 | 样本名称 | 生物样本编号 | 样本访问号 | 实验访问号 | 释放时间 | 提交时间 | 最后更新时间 | 物种 | 种族 | 族裔 | 年龄 | 年龄单位 | 性别 | 来源名称 | 组织 | 细胞类型 | 细胞亚型 | 细胞系 | 疾病 | 疾病状态 | 发育阶段 | 突变/变异 | 表型 | Condition Detail | 生长方案 | 处理方案 | 提取方案 | 建库方案 | 分子类型 | 库的片段类型 | 链特异性 | 库的链类型 | 加标(Spike-In) | 测序方法 | 测序平台 | 测序仪型号 | 细胞数 | 测序片段数 | 碱基数 | 平均测序片段长度_1 | 平均测序片段长度_2 | 唯一比对率 | 多重比对率 | 覆盖度 |
|---|