Gene Expression Nebulas
基于标准化流程分析的转录图谱综合数据库

Gene Expression Nebulas

多物种转录图谱整合数据库

PRJNA326167: Human Single Cells - Local lung hypoxia determines epithelial fate decisions during alveolar regeneration

来源: NCBI / GSE83501
提交时间: Jun 19 2016
释放时间: Jun 20 2017
最后更新时间: May 15 2019

概要: Single human lung epithelial cell transcriptomes, isolated and processed via Fluidigm C1

项目整体设计: Flow sorted cells from digested human lungs were captured on the Fluidigm C1 chip.

GEN 数据集:
GEND000212
测序方法:
物种:
组织:
健康状况:
细胞类型:
方案
生长方案: -
处理方案: Tissue was mechanically and enzymatically disaggregated using dispase. Single cells were then stained with antibodies and flow sorted.
提取方案: Cells were loaded into the Fluidigm C1 microfluidic platform, where single cells were captured. Lysis of single cells, reverse-transcription of mRNA into cDNA as well as preamplification of cDNA occured within the microfluidic device using reagents provided by Fluidigm as well as the SMARTer Ultra Low RNA kit for Illumina (Clontech). External RNA spike-in transcripts (ERCC spike-in Mix, Ambion) were added to all single cell lysis reactions.
建库方案: Libraries were prepared using Illumina Nextera XT kit per illumina^s protocols.
测序信息
分子类型: poly(A)+ RNA
库的片段类型: PAIRED
库的链类型: -
测序平台: ILLUMINA
测序仪型号: Illumina HiSeq 2500
链特异性: Unspecific
样本
基本信息:
样本描述:
生物条件:
实验变量:
方案:
测序信息:
质量评估:
数据来源 GEN样本编号 GEN数据集编号 系列编号 项目编号 样本编号 样本名称 生物样本编号 样本访问号 实验访问号 释放时间 提交时间 最后更新时间 物种 种族 族裔 年龄 年龄单位 性别 来源名称 组织 细胞类型 细胞亚型 细胞系 疾病 疾病状态 发育阶段 突变/变异 表型 Condition Detail 生长方案 处理方案 提取方案 建库方案 分子类型 库的片段类型 链特异性 库的链类型 加标(Spike-In) 测序方法 测序平台 测序仪型号 细胞数 测序片段数 碱基数 平均测序片段长度_1 平均测序片段长度_2 唯一比对率 多重比对率 覆盖度
文章
Local lung hypoxia determines epithelial fate decisions during alveolar regeneration.
Nature cell biology . 2017-07-24 [PMID: 28737769]