Gene Expression Nebulas
A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

Gene Expression Nebulas

A data portal of transcriptome profiles across multiple species
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PRJNA403975

PRJNA403975: Oryza sativa Transcriptome under micronutrient deficiency in root.

Source: NCBI / SRP117202
Submission Date: -
Release Date: May 11 2018
Update Date: -

Summary: -

Overall Design: Identify mirocronutrient deficiency dys-regulated genes using high-throughput RNA sequencing of rice roots under different mineral deficient growth conditions (Fe-, Zn-, Cu- or Mn-deficient).

GEN Datasets:
GEND000302
Strategy:
Species:
Tissue:
Development Stage:
Protocol
Growth Protocol: -
Treatment Protocol: Control; Fe deficient; Zn deficient; Cu deficient; Mn deficient
Extract Protocol: -
Library Construction Protocol: -
Sequencing
Molecule Type: -
Library Source:
Library Layout: PAIRED
Library Strand: Forward
Platform: ILLUMINA
Instrument Model: HiSeq X Ten
Strand-Specific: Specific
Samples
Basic Information:
Sample Characteristic:
Biological Condition:
Experimental Variables:
Protocol:
Sequencing:
Assessing Quality:
Analysis:
Data Resource GEN Sample ID GEN Dataset ID Project ID BioProject ID Sample ID Sample Name BioSample ID Sample Accession Experiment Accession Release Date Submission Date Update Date Species Race Ethnicity Age Age Unit Gender Source Name Tissue Cell Type Cell Subtype Cell Line Disease Disease State Development Stage Mutation Phenotype Case Detail Control Detail Growth Protocol Treatment Protocol Extract Protocol Library Construction Protocol Molecule Type Library Layout Strand-Specific Library Strand Spike-In Strategy Platform Instrument Model Cell Number Reads Number Gbases AvgSpotLen1 AvgSpotLen2 Uniq Mapping Rate Multiple Mapping Rate Coverage Rate
Publications
Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (Oryza sativa).
The Plant cell . 2018-09-25 [PMID: 30254029]