Gene Expression Nebulas
基于标准化流程分析的转录图谱综合数据库

Gene Expression Nebulas

多物种转录图谱整合数据库

PRJNA721668: SARS-CoV-2 infection in pregnancy is associated with robust inflammatory response at the maternal-fetal interface

来源: NCBI / GSE171995
提交时间: Apr 13 2021
释放时间: Apr 14 2021
最后更新时间: May 28 2021

概要: Pregnant women appear to be at increased risk for severe outcomes associated with COVID-19, but the pathophysiology underlying this increased morbidity and its potential impact on the developing fetus is not well understood. In this study of pregnant women with and without COVID-19, we assessed viral and immune dynamics at the placenta during maternal SARS-CoV-2 infection. Viral RNA was only rarely detected in the placentas from SARS-CoV-2-positive women in our cohort, with only 1/11 positive for infection at the maternal-fetal interface. Through bulk RNA transcriptomic analyses, we found that placentas from SARS-CoV-2-positive pregnancies exhibited inflammatory markers of immune activation, even in the majority of samples which did not show local invasion of the virus. These markers are associated with pregnancy complications such as preeclampsia and poor fetal outcomes. Overall, this study suggests that SARS-CoV-2 is associated with immune activation at the maternal-fetal interface even in the absence of detectable local viral invasion. While this likely represents a protective mechanism shielding the placenta from infection, inflammatory changes in the placenta may also contribute to poor pregnancy outcomes and thus warrant further investigation.

项目整体设计: mRNA profiles of placental villous tissue at term delivery from control and SARS-CoV-2-positive mothers

GEN 数据集:
GEND000463
测序方法:
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方案
生长方案: -
处理方案: -
提取方案: Villi were dissected from fresh placental tissue and rinsed three times in PBS. Villous samples were homogenized and centrifuged before RNA isolation using the Qiagen RNAeasy Mini Kit.
建库方案: RNA libraries were prepared for sequencing following rRNA depletion using standard Illumina protocols
测序信息
分子类型: rRNA- RNA
库的片段类型: PAIRED
库的链类型: -; Forward
测序平台: ILLUMINA
测序仪型号: Illumina HiSeq 2500
链特异性: Unspecific; Specific
样本
基本信息:
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数据来源 GEN样本编号 GEN数据集编号 系列编号 项目编号 样本编号 样本名称 生物样本编号 样本访问号 实验访问号 释放时间 提交时间 最后更新时间 物种 种族 族裔 年龄 年龄单位 性别 来源名称 组织 细胞类型 细胞亚型 细胞系 疾病 疾病状态 发育阶段 突变/变异 表型 Condition Detail 生长方案 处理方案 提取方案 建库方案 分子类型 库的片段类型 链特异性 库的链类型 加标(Spike-In) 测序方法 测序平台 测序仪型号 细胞数 测序片段数 碱基数 平均测序片段长度_1 平均测序片段长度_2 唯一比对率 多重比对率 覆盖度
文章
An Immuno-Cardiac Model for Macrophage-Mediated Inflammation in COVID-19 Hearts.
Circulation research . 2021-04-15 [PMID: 33853355]
Maternal respiratory SARS-CoV-2 infection in pregnancy is associated with a robust inflammatory response at the maternal-fetal interface.
Med (New York, N.Y.) . 2021-04-30 [PMID: 33969332]