Gene Expression Nebulas
基于标准化流程分析的转录图谱综合数据库

Gene Expression Nebulas

多物种转录图谱整合数据库

PRJNA735258: Immune signatures underlying post-acute COVID-19 lung sequelae

来源: NCBI / GSE176201
提交时间: Jun 04 2021
释放时间: Sep 17 2021
最后更新时间: Nov 22 2021

概要: Although a substantial proportion of severe COVID-19 pneumonia survivors exhibit long-term pulmonary sequalae, the underlying mechanisms or associated local and systemic immune correlates are not known. Here, we have performed high dimensional characterization of the pathophysiological and immune traits of aged COVID-19 convalescents, and correlated the local and systemic immune profiles with pulmonary function and lung imaging. In this cohort of aged COVID-19 convalescents, chronic lung impairment was accompanied by persistent systemic inflammation and respiratory immune alterations. Detailed evaluation of the lung immune compartment revealed dysregulated respiratory CD8+ T cell responses that likely underlie the impaired lung function following acute COVID-19 during aging. Single cell transcriptomic analysis identified the potential pathogenic subsets of respiratory CD8+ T cells causing persistent tissue conditions following COVID-19. Our results have revealed key pathophysiological and immune traits that support the development of lung sequelae following SARS-CoV2 pneumonia during aging, with implications for the treatment of chronic COVID-19 symptoms.

项目整体设计: single-cell RNA-seq / TCR-seq assay of PBMC or BAL T cells from aged COVID-19 convalescents or healthy donors

GEN 数据集:
GEND000374
测序方法:
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方案
生长方案: -
处理方案: CD3+ T cells were purified from PBMC and BAL cells with the StraightFrom® Whole Blood CD3 MicroBeads (Miltenyi Biotech).
提取方案: Library were generated by following the instruction of 10X 5’ Library & Gel Bead Kit v1.1
建库方案: Library were generated by following the instruction of 10X 5’ Library & Gel Bead Kit v1.1
测序信息
分子类型: polyA(+) RNA
库的片段类型: PAIRED
库的链类型: -
测序平台: ILLUMINA
测序仪型号: Illumina HiSeq 4000
链特异性: -
样本
基本信息:
样本描述:
生物条件:
实验变量:
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数据来源 GEN样本编号 GEN数据集编号 系列编号 项目编号 样本编号 样本名称 生物样本编号 样本访问号 实验访问号 释放时间 提交时间 最后更新时间 物种 种族 族裔 年龄 年龄单位 性别 来源名称 组织 细胞类型 细胞亚型 细胞系 疾病 疾病状态 发育阶段 突变/变异 表型 Condition Detail 生长方案 处理方案 提取方案 建库方案 分子类型 库的片段类型 链特异性 库的链类型 加标(Spike-In) 测序方法 测序平台 测序仪型号 细胞数 测序片段数 碱基数 平均测序片段长度_1 平均测序片段长度_2 唯一比对率 多重比对率 覆盖度
文章
Immune signatures underlying post-acute COVID-19 lung sequelae.
Science immunology . 2021-11-12 [PMID: 34591653]